{"id":"W4308844433","doi":"10.1101/2022.11.09.515820","title":"Multi-omics analysis identifies symbionts and pathogens of blacklegged ticks ( <i>Ixodes scapularis</i> ) from a Lyme disease hotspot in southeastern Ontario, Canada","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"","keywords":"Ixodes scapularis; Biology; Borrelia; Borrelia burgdorferi; Anaplasma phagocytophilum; Lyme disease; Tick; Microbiology; Anaplasma; Ixodes; Virology; Ixodidae; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001940597,0.0004629417,0.0003725022,0.001429162,0.001707116,0.001011834,0.000309116,0.0002248123,0.001153434],"category_scores_gemma":[0.0003134374,0.0001636632,0.0005236581,0.001805136,0.0004577953,0.0001678866,0.0006966285,0.0002614101,0.0002647939],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005481416,"about_ca_system_score_gemma":0.006414443,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8876213,"about_ca_topic_score_gemma":0.9500341,"domain_scores_codex":[0.9997413,0.00001118145,0.00001222227,0.00007162558,0.00007425053,0.00008946174],"domain_scores_gemma":[0.9996902,0.0000174596,0.00004564756,0.00001144491,0.0001808402,0.00005455297],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004343304,0.00006410878,0.8504171,0.0004016367,0.0003423704,0.0003129176,0.00206015,0.0009826891,0.1153388,0.0002689758,0.004165859,0.02521101],"study_design_scores_gemma":[0.000005398537,0.00002191411,0.9912179,0.00003438387,0.00006674921,0.00005883842,0.001808571,0.0008276608,0.002104232,0.00004710792,0.003795436,0.00001160945],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9742969,0.001552654,0.00093214,0.0003131295,0.00001607859,0.00004962245,0.0209777,0.00003990605,0.001821901],"genre_scores_gemma":[0.9720333,0.001285628,0.003355639,0.0002797887,0.0000109886,0.00005076076,0.0200458,0.00002214129,0.002915907],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1123787,"threshold_uncertainty_score":0.226081,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00915071757097965,"score_gpt":0.1987147669070091,"score_spread":0.1895640493360295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}