{"id":"W4308918431","doi":"10.1093/emph/eoac037","title":"Antigenic evolution of SARS-CoV-2 in immunocompromised hosts","year":2022,"lang":"en","type":"article","venue":"Evolution Medicine and Public Health","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Environment Research Council; Sight Research UK","keywords":"Immune system; Epistasis; Biology; Pandemic; Host (biology); Immune escape; Antigen; Evolutionary biology; Genetic Fitness; Antigenic variation; Immunology; Coronavirus disease 2019 (COVID-19); Virology; Genetics; Gene; Disease; Medicine; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003185512,0.0001835714,0.0006299498,0.001139881,0.0002712221,0.000008178128,0.0001820502,0.00008382403,0.00005611736],"category_scores_gemma":[0.0004718742,0.0001655063,0.00007565765,0.00170963,0.0002284615,0.0001479656,0.0001471333,0.0006555797,0.00000847358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001432184,"about_ca_system_score_gemma":0.002908084,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01183273,"about_ca_topic_score_gemma":0.000293044,"domain_scores_codex":[0.9966936,0.0004959073,0.000788586,0.0004215672,0.000918121,0.000682282],"domain_scores_gemma":[0.9989151,0.0001278335,0.0002386328,0.0004175942,0.0001928107,0.0001079803],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001256489,0.001710286,0.5699195,0.00156935,0.0001578472,0.00007303933,0.007241474,0.000001577157,0.3443734,0.01491374,0.02350622,0.03527711],"study_design_scores_gemma":[0.01706988,0.005678284,0.5052872,0.0004125306,0.00003609258,0.0003882591,0.009489869,0.004306089,0.0019745,0.001457044,0.4534911,0.0004091512],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.961625,0.01539882,0.0009638877,0.01909445,0.0002691167,0.000970195,0.00001341012,0.00006703828,0.001598036],"genre_scores_gemma":[0.9781251,0.00009543524,0.00008447768,0.02135234,0.0001783778,0.00009066459,0.00002383921,0.00002201038,0.00002776786],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4299848,"threshold_uncertainty_score":0.9947476,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08908935059798975,"score_gpt":0.3919751643100936,"score_spread":0.3028858137121039,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}