{"id":"W4308918431","doi":"10.1093/emph/eoac037","title":"Antigenic evolution of SARS-CoV-2 in immunocompromised hosts","year":2022,"lang":"en","type":"article","venue":"Evolution Medicine and Public Health","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Environment Research Council; Sight Research UK","keywords":"Immune system; Epistasis; Biology; Pandemic; Host (biology); Immune escape; Antigen; Evolutionary biology; Genetic Fitness; Antigenic variation; Immunology; Coronavirus disease 2019 (COVID-19); Virology; Genetics; Gene; Disease; Medicine; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003318451,0.0004852675,0.0004839692,0.0002696555,0.0003628843,0.001130251,0.0004645158,0.0008237557,0.003038124],"category_scores_gemma":[0.001603437,0.0002212364,0.0008209114,0.0001915114,0.0005898729,0.001008098,0.0008361872,0.0006611166,0.000326172],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007452623,"about_ca_system_score_gemma":0.0005660259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002700341,"about_ca_topic_score_gemma":0.00130414,"domain_scores_codex":[0.9998106,0.00006553515,0.000007508682,0.0000438379,0.00002437867,0.00004805944],"domain_scores_gemma":[0.9994314,0.0002038379,0.0002305934,0.00002599605,0.00002697344,0.00008122451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","study_design_scores_codex":[0.0006754694,0.0005498584,0.09032593,0.0003770519,0.0004060643,0.003955673,0.0005608298,0.7232476,0.09341844,0.06683118,0.001942664,0.01770918],"study_design_scores_gemma":[0.0001640032,0.0006175226,0.03450355,0.00004805463,0.0001828076,0.002239557,0.0003105116,0.9318345,0.004102557,0.0234635,0.002452011,0.00008143602],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9666786,0.000839195,0.02448352,0.0009921705,0.00004451853,0.00002893582,0.0001546772,0.0000489694,0.006729551],"genre_scores_gemma":[0.9957163,0.0003597899,0.001651187,0.00009451646,0.00001232133,0.00001712996,0.0000390782,0.000007807207,0.002101867],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003038124,"threshold_uncertainty_score":0.01016361,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08908935059798975,"score_gpt":0.3919751643100936,"score_spread":0.3028858137121039,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}