{"id":"W4308966607","doi":"10.21203/rs.3.rs-2136604/v1","title":"Rapid evolution of A(H5N1) influenza viruses after intercontinental spread to North America","year":2022,"lang":"en","type":"preprint","venue":"Research Square","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Canadian Science Centre for Human and Animal Health","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; St. Jude Children's Research Hospital","keywords":"Reassortment; Influenza A virus subtype H5N1; Clade; Biology; Virology; Lineage (genetic); Highly pathogenic; Viral evolution; Virus; Influenza A virus; Pandemic; Phylogenetics; Gene; Genetics; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty); Genome; Disease; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003219653,0.0001323044,0.0001061289,0.0004187715,0.0005026133,0.0005065594,0.0001522834,0.0003449882,0.001146303],"category_scores_gemma":[0.0003370023,0.00006509766,0.0001580257,0.0003238929,0.0001838896,0.000189213,0.0003264703,0.0002618139,0.0002845188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004515824,"about_ca_system_score_gemma":0.00025687,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009292108,"about_ca_topic_score_gemma":0.01090108,"domain_scores_codex":[0.9999152,0.00001816731,0.000003586585,0.00002723475,0.00001692105,0.00001881524],"domain_scores_gemma":[0.9998222,0.00002863063,0.00005366626,0.00001462974,0.00004626691,0.00003466752],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001022746,0.0001972275,0.6240118,0.0001158708,0.0001382193,0.002107503,0.002101213,0.001284725,0.3260247,0.000715172,0.001603812,0.04067708],"study_design_scores_gemma":[0.000009279899,0.0001221734,0.9902895,0.00001733569,0.00001725186,0.0004395109,0.0007722538,0.0005708774,0.004406658,0.0001190832,0.003229519,0.000006423163],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977763,0.0004622545,0.0001312684,0.0000947298,0.00001673778,0.000005560962,0.00009489727,0.000006044691,0.001412165],"genre_scores_gemma":[0.9984902,0.000243083,0.0002909714,0.00006620937,0.00001125479,0.00000395231,0.0002418129,0.000003322407,0.0006490533],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9907079,"threshold_uncertainty_score":0.01847601,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1356170006133975,"score_gpt":0.4549720052315412,"score_spread":0.3193550046181437,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}