{"id":"W4308970080","doi":"10.3390/applmicrobiol2040071","title":"Globally Disseminated Multidrug Resistance Plasmids Revealed by Complete Assembly of Multidrug Resistant Escherichia coli and Klebsiella pneumoniae Genomes from Diarrheal Disease in Botswana","year":2022,"lang":"en","type":"article","venue":"Applied Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada; Alliance de recherche numérique du Canada; Saskatchewan Health Research Foundation; University of Regina; Simon Fraser University; National Science Foundation","keywords":"Plasmid; Biology; Antibiotic resistance; Klebsiella pneumoniae; Horizontal gene transfer; Escherichia coli; Multiple drug resistance; Microbiology; Gene; Genome; Genetics; Resistome; Drug resistance; Virology; Antibiotics; Mobile genetic elements","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001771619,0.0002967528,0.000216898,0.000656336,0.0003722038,0.0005462179,0.0001781554,0.0003142651,0.0003980009],"category_scores_gemma":[0.0005159154,0.0003068899,0.0002728647,0.0007528181,0.0002350417,0.0001536601,0.0004572501,0.0002902729,0.0001551233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005937712,"about_ca_system_score_gemma":0.0004689307,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01161556,"about_ca_topic_score_gemma":0.0287122,"domain_scores_codex":[0.999872,0.0000143609,0.00001092118,0.00005148804,0.00001858609,0.00003265384],"domain_scores_gemma":[0.9998116,0.00004217715,0.00005218843,0.0000272332,0.00004110189,0.00002573656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003599979,0.00001884268,0.1099068,0.0001677385,0.0000563016,0.0007355071,0.001250138,0.0007735306,0.8728086,0.0001473194,0.0002229494,0.01355227],"study_design_scores_gemma":[0.00002347554,0.0002235836,0.9321632,0.0001206325,0.0001736415,0.00151437,0.00211875,0.004343842,0.05208041,0.0002870246,0.006917055,0.00003404361],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979343,0.0002618089,0.0007862433,0.00005581282,0.000004582173,0.000008690712,0.0006457292,0.00002032219,0.0002823911],"genre_scores_gemma":[0.994895,0.0001737258,0.002764867,0.00006837754,0.000001480043,0.00001690498,0.001688639,0.00002081677,0.0003702682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01161556,"threshold_uncertainty_score":0.02309591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004415566563389049,"score_gpt":0.2072673813582045,"score_spread":0.2028518147948155,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}