{"id":"W4309159505","doi":"10.1093/dnares/dsac044","title":"A highly contiguous genome assembly of red perilla ( <i>Perilla frutescens</i> ) domesticated in Japan","year":2022,"lang":"en","type":"article","venue":"DNA Research","topic":"Natural Products and Biological Research","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Co-creation place formation support program; Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Perilla frutescens; Contig; Rosmarinic acid; Perilla; Biology; Lamiaceae; Genome; Sequence assembly; Gene; Whole genome sequencing; Computational biology; Botany; Genetics; Transcriptome; Food science; Gene expression; Biochemistry","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003536341,0.0008431693,0.0007123065,0.001592983,0.000908888,0.0006761636,0.0005326302,0.0004993094,0.002356578],"category_scores_gemma":[0.0008442642,0.0005484554,0.00127447,0.001720832,0.0002442193,0.0004650936,0.0006120687,0.0009183637,0.001402428],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006781456,"about_ca_system_score_gemma":0.001273992,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01032338,"about_ca_topic_score_gemma":0.0132847,"domain_scores_codex":[0.9997216,0.00002412009,0.00002191147,0.0001412453,0.00005676339,0.00003440907],"domain_scores_gemma":[0.9997084,0.00005742106,0.0000606164,0.0000296523,0.00009237574,0.00005152608],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007947189,0.0001019621,0.006978892,0.001075562,0.0001481664,0.00098728,0.001052049,0.003848527,0.9337443,0.001160345,0.003944289,0.04616389],"study_design_scores_gemma":[0.0004654367,0.0009966572,0.319138,0.0007344052,0.001814195,0.002611211,0.001595144,0.06979645,0.3828833,0.003270164,0.2162929,0.0004021394],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7416173,0.004208722,0.1550996,0.000682237,0.0003375505,0.000536697,0.08240364,0.005046408,0.01006777],"genre_scores_gemma":[0.5102922,0.002321266,0.2153652,0.0003060171,0.00007707166,0.0004870874,0.259602,0.002335773,0.009213267],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01032338,"threshold_uncertainty_score":0.02052659,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08566215232593934,"score_gpt":0.3868507169056243,"score_spread":0.301188564579685,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}