{"id":"W4309293725","doi":"10.1139/cjfas-2022-0019","title":"Detection and phylogenetic assessment of PRV-1 via sampling of biological materials released from salmon farms in British Columbia","year":2022,"lang":"en","type":"article","venue":"Canadian Journal of Fisheries and Aquatic Sciences","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia; Raincoast Conservation Foundation; Fisheries and Oceans Canada","funders":"Liber Ero Foundation","keywords":"Salmo; Oncorhynchus; Biology; Phylogenetic tree; Clade; Fish farming; Fishery; Chinook wind; Salmonidae; Poultry farming; Lineage (genetic); Aquaculture; Monophyly; Agriculture; Zoology; Ecology; Fish <Actinopterygii>; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003548566,0.0003071908,0.0001737375,0.001533984,0.001324245,0.000643493,0.0004096627,0.0002625005,0.0005498431],"category_scores_gemma":[0.0008946187,0.0002681561,0.0001007804,0.001389603,0.0005694054,0.0001498844,0.0005522444,0.0002918449,0.0002029065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002344127,"about_ca_system_score_gemma":0.002841404,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6686463,"about_ca_topic_score_gemma":0.8615732,"domain_scores_codex":[0.9992767,0.0000640665,0.00004330263,0.0001927988,0.0002794901,0.0001436113],"domain_scores_gemma":[0.9993119,0.00006691016,0.0001550494,0.00003155704,0.0003142401,0.0001202681],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008876303,0.00003881814,0.9292729,0.00003553768,0.00001718156,0.0001692243,0.001126346,0.000141893,0.05952609,0.00002805653,0.0001125203,0.009442606],"study_design_scores_gemma":[0.000002280315,0.00004930474,0.996466,0.00001106503,0.000005904937,0.00007792105,0.0009946647,0.0001298519,0.00187535,0.00000543994,0.0003789478,0.000003319108],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987342,0.00008858263,0.0001802442,0.00001398914,0.000001458574,0.00003261923,0.0003057449,0.00000338793,0.0006398792],"genre_scores_gemma":[0.9956078,0.0002806491,0.001516928,0.00005067401,0.000002240589,0.00004224377,0.001144119,0.000003880003,0.001351529],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3313537,"threshold_uncertainty_score":0.6666102,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01861765924897396,"score_gpt":0.225287660300671,"score_spread":0.2066700010516971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}