{"id":"W4309474916","doi":"10.1016/j.virol.2022.10.012","title":"Expansion of viral genomes with viral protein genome linked copies","year":2022,"lang":"en","type":"article","venue":"Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Life Sciences Institute","keywords":"Genome; Biology; Genetics; Virus; Computational biology; Viral replication; Metagenomics; Gene; Virology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000198437,0.0001090062,0.0002368991,0.00002552866,0.000334056,0.000008053614,0.0002903594,0.00004113542,0.00067234],"category_scores_gemma":[0.00001918898,0.00003966103,0.0000439927,0.0001806368,0.000209728,0.0000483794,0.0003779755,0.0001885673,0.00001666562],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002609728,"about_ca_system_score_gemma":0.00001512745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002152793,"about_ca_topic_score_gemma":0.0001683787,"domain_scores_codex":[0.9988192,0.0001969381,0.0001575501,0.0002391679,0.0002679088,0.0003192901],"domain_scores_gemma":[0.999687,0.00009932912,0.00008181169,0.00005584584,0.00003190675,0.0000440811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003189238,0.0000543079,0.0006481575,0.000005270908,0.00002561277,0.00002959574,0.0001250645,0.00003144918,0.9952837,0.0002079,0.00009627963,0.003173714],"study_design_scores_gemma":[0.001475305,0.01867156,0.6555879,0.00001399641,0.00003825404,0.0001283919,0.001893418,0.0001914319,0.05550231,0.002575306,0.2631204,0.000801714],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973742,0.0006173137,0.00000132768,0.000998297,0.00002568513,0.0003332498,0.0003159039,0.00003800797,0.0002959676],"genre_scores_gemma":[0.9989254,0.00006000924,0.00006951418,0.0001576849,0.00006538664,0.0001519952,0.00008359249,9.763187e-7,0.0004853855],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9397814,"threshold_uncertainty_score":0.7361652,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02325098351353142,"score_gpt":0.2294384209541536,"score_spread":0.2061874374406222,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}