{"id":"W4309514343","doi":"10.1128/mra.00447-22","title":"Metagenome-Assembled Genomes for “ <i>Candidatus</i> Phormidium sp. Strain AB48” and Co-occurring Microorganisms from an Industrial Photobioreactor Environment","year":2022,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Mitacs; Genome British Columbia; Joint Genome Institute; U.S. Department of Energy","keywords":"Metagenomics; Microorganism; Biofilm; Photobioreactor; Genome; Biology; Horizontal gene transfer; Plasmid; Strain (injury); Microbiology; Candidatus; Mobile genetic elements; Bacteria; Computational biology; Gene; Genetics; Ecology; Biomass (ecology)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003058696,0.001107826,0.0006506211,0.001841535,0.0007497451,0.0005856052,0.0005898086,0.0007440874,0.002654564],"category_scores_gemma":[0.0007119923,0.0004766685,0.001041462,0.002232948,0.0001774073,0.0004675965,0.0005220696,0.001240228,0.000926613],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005147232,"about_ca_system_score_gemma":0.001115096,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006975488,"about_ca_topic_score_gemma":0.01181678,"domain_scores_codex":[0.9997721,0.00002365729,0.00002468026,0.00008075101,0.00005496625,0.00004385569],"domain_scores_gemma":[0.9997794,0.00005065088,0.00005416517,0.00002561878,0.00004125325,0.00004895507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001466631,0.0001670876,0.004790772,0.001076635,0.0001721002,0.0003047376,0.000351874,0.001334344,0.9773498,0.0004482235,0.001570883,0.01096695],"study_design_scores_gemma":[0.0004562238,0.0017838,0.3122677,0.0005175386,0.001774988,0.002563929,0.001920468,0.02608456,0.5635583,0.001567391,0.08718845,0.0003166522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7400919,0.001371056,0.01378271,0.0002839242,0.000122583,0.0005183842,0.2390863,0.001178036,0.003565012],"genre_scores_gemma":[0.4172987,0.001146168,0.06097508,0.0002594817,0.00003448946,0.0006640021,0.5157199,0.0005678699,0.003334418],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006975488,"threshold_uncertainty_score":0.01386982,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01910016723544204,"score_gpt":0.2377442772791648,"score_spread":0.2186441100437228,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}