{"id":"W4309514343","doi":"10.1128/mra.00447-22","title":"Metagenome-Assembled Genomes for “ <i>Candidatus</i> Phormidium sp. Strain AB48” and Co-occurring Microorganisms from an Industrial Photobioreactor Environment","year":2022,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Mitacs; Genome British Columbia; Joint Genome Institute; U.S. Department of Energy","keywords":"Metagenomics; Microorganism; Biofilm; Photobioreactor; Genome; Biology; Horizontal gene transfer; Plasmid; Strain (injury); Microbiology; Candidatus; Mobile genetic elements; Bacteria; Computational biology; Gene; Genetics; Ecology; Biomass (ecology)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003723621,0.0003557406,0.0003771745,0.00006769075,0.0005753634,0.00004367404,0.0004051308,0.0001832039,0.0001269101],"category_scores_gemma":[0.000009592869,0.0003726236,0.0001087355,0.00005078269,0.0001329624,0.000002633196,0.0005447568,0.0001818375,0.000005429114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007659302,"about_ca_system_score_gemma":0.0000716679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005431331,"about_ca_topic_score_gemma":0.00001491143,"domain_scores_codex":[0.9979568,0.0001690424,0.0003803297,0.0008677539,0.0000836026,0.0005424566],"domain_scores_gemma":[0.9991833,0.00002923024,0.0002024159,0.0004395506,0.00002390445,0.0001215822],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003596738,0.00015761,0.01222407,0.000004653618,0.0004098095,0.000002862085,0.0003544046,0.00004204671,0.9822517,0.000002512284,0.003011888,0.001178732],"study_design_scores_gemma":[0.002190923,0.0009881547,0.0003719871,0.000002144458,0.00008953988,0.0000182084,0.000893357,0.000004200955,0.1436913,0.0000275228,0.8513425,0.0003801216],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.971693,0.003429942,0.0000726997,0.0000898134,0.0002012731,0.0007910466,0.0236296,0.000008154345,0.00008449599],"genre_scores_gemma":[0.9705929,0.0004015227,0.0008767439,0.002256368,0.0005498893,0.00038441,0.02450389,0.00008924632,0.0003450098],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8483306,"threshold_uncertainty_score":0.9998726,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01910016723544204,"score_gpt":0.2377442772791648,"score_spread":0.2186441100437228,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}