{"id":"W4309517453","doi":"10.1111/tbed.14759","title":"Screen the unforeseen: Microbiome‐profiling for detection of zoonotic pathogens in wild rats","year":2022,"lang":"en","type":"article","venue":"Transboundary and Emerging Diseases","topic":"Bartonella species infections research","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Newfoundland and Labrador; European Commission","keywords":"Biology; Amplicon; Microbiome; Hypervariable region; Leptospira; 16S ribosomal RNA; Polymerase chain reaction; DNA sequencing; Sanger sequencing; Microbiology; Virology; Genetics; Leptospirosis; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002751975,0.0001118097,0.0001756176,0.0002044527,0.001005361,0.00001640197,0.0001639307,0.0000449547,0.0002798375],"category_scores_gemma":[0.00002805957,0.00009583546,0.0001070981,0.0003466043,0.0004380228,0.00007347829,0.00007022336,0.0002438693,0.0000035994],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004294665,"about_ca_system_score_gemma":0.00008038535,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001571325,"about_ca_topic_score_gemma":0.0001007141,"domain_scores_codex":[0.998988,0.0002106569,0.000241824,0.0002218313,0.00004517449,0.0002925138],"domain_scores_gemma":[0.9994956,0.0002186954,0.00004614537,0.000186548,0.00003388229,0.00001914138],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00120186,0.0002924034,0.01079903,0.0001726407,0.0001833786,0.000004410982,0.001130659,0.0009943909,0.9589162,0.001161599,0.0002682582,0.0248751],"study_design_scores_gemma":[0.01185747,0.00288894,0.09593311,0.0001674189,0.000792306,0.0004282927,0.01755451,0.001730314,0.6553273,0.005385624,0.2064314,0.001503301],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909018,0.006476796,0.000680547,0.0003321528,0.0003269856,0.0005438548,0.0005979612,0.00003391262,0.0001060374],"genre_scores_gemma":[0.999231,0.0001123689,0.00002699002,0.00003474936,0.00002047166,0.0001594609,0.0001535639,0.0000142214,0.0002471057],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.303589,"threshold_uncertainty_score":0.7732528,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01296003231350066,"score_gpt":0.2549380819081633,"score_spread":0.2419780495946627,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}