{"id":"W4309725898","doi":"10.1016/j.fm.2022.104192","title":"Heightened variability observed in resistance and virulence genes across salmonella Kentucky isolates from poultry environments in British Columbia, Canada","year":2022,"lang":"en","type":"article","venue":"Food Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Salmonella; Serotype; Virulence; Salmonella enterica; Biology; Antibiotic resistance; Plasmid; Pathogenicity island; Microbiology; Gene; Genetics; Bacteria; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005494486,0.000151791,0.0004318343,0.000004963958,0.0003925755,0.00006303912,0.0003909732,0.0001657654,0.0003616633],"category_scores_gemma":[0.00007795181,0.0001253167,0.00004473069,0.0002135687,0.0001446845,0.00004866079,0.0004124476,0.0002909431,0.000001930083],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002243211,"about_ca_system_score_gemma":0.00003710049,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8468009,"about_ca_topic_score_gemma":0.9953421,"domain_scores_codex":[0.9972007,0.0008865845,0.0004850223,0.0007919511,0.00005282106,0.0005828761],"domain_scores_gemma":[0.9990169,0.0006352832,0.0001425921,0.0001196339,0.00001004789,0.0000755536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004022971,0.00006872719,0.6684085,0.000002810486,0.000009878503,0.00002278879,0.00003451065,0.000005053419,0.329643,9.261807e-7,0.0003085265,0.001455082],"study_design_scores_gemma":[0.0003860093,0.0001680626,0.9721332,0.00001124834,0.000004136969,0.00003128446,0.0007076745,0.000003862117,0.000494027,0.0008257073,0.02498066,0.0002541482],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941206,0.003047548,4.215241e-7,0.0004163365,0.000240003,0.0002522061,0.001889059,0.00001470815,0.0000191048],"genre_scores_gemma":[0.9980354,0.0003098209,0.00004641768,0.0007242756,0.00004259452,0.00006846566,0.0005208027,0.000002223304,0.000249942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3291489,"threshold_uncertainty_score":0.5110269,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01305304996974193,"score_gpt":0.1809584964562483,"score_spread":0.1679054464865064,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}