{"id":"W4309855338","doi":"10.3390/microorganisms10122327","title":"Next Generation Sequencing Approaches to Characterize the Respiratory Tract Virome","year":2022,"lang":"en","type":"review","venue":"Microorganisms","topic":"Respiratory viral infections research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Ministry of Education and Science of the Republic of Kazakhstan","keywords":"Human virome; Biology; Pandemic; Metagenomics; Microbiome; Computational biology; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Disease; Bioinformatics; Medicine; Genetics; Pathology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001488972,0.0005884107,0.001417436,0.0005866491,0.0006910717,0.000303161,0.0005924093,0.000355093,0.002895204],"category_scores_gemma":[0.0003336876,0.0004069092,0.0004673791,0.001655783,0.0001146815,0.0001936188,0.0003800364,0.001749018,0.001286844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001927822,"about_ca_system_score_gemma":0.001777512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003877461,"about_ca_topic_score_gemma":0.000006989403,"domain_scores_codex":[0.9960658,0.0008796733,0.0009276967,0.0008732964,0.0006680092,0.0005855088],"domain_scores_gemma":[0.9978224,0.0001810775,0.0002959112,0.001361588,0.00006581257,0.0002731908],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001114906,0.0001745792,0.000006454116,0.003313439,0.0002241316,0.0001386159,0.0002531551,0.000001846359,0.1361638,0.00009919963,0.002876584,0.8567371],"study_design_scores_gemma":[0.0001797751,0.0004291683,0.00004254358,0.0005638025,0.0004200869,0.0004427689,0.00006866818,0.000004232327,0.001405591,0.000002764574,0.9960567,0.000383917],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003197873,0.9912516,0.0001037245,0.0002442769,0.0004755409,0.003633604,0.00007956929,0.0001605095,0.000853316],"genre_scores_gemma":[0.0002165904,0.9911118,0.0002757253,0.002321233,0.001968727,0.001443004,0.0004126483,0.0003294444,0.00192089],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9931801,"threshold_uncertainty_score":0.9998383,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.6341608437396177,"score_gpt":0.3919370166507072,"score_spread":0.2422238270889104,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}