{"id":"W4309969718","doi":"10.1101/2022.11.25.517930","title":"Multi-drug resistant <i>E. coli</i> displace commensal <i>E. coli</i> from the intestinal tract, a trait associated with elevated levels of genetic diversity in carbohydrate metabolism genes","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Wellcome Trust","keywords":"Biology; Escherichia coli; Microbiology; Colonization; Antibiotics; Antibiotic resistance; Mobile genetic elements; Multiple drug resistance; Gene; Drug resistance; Genetics; Plasmid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001372278,0.0003642354,0.0002629579,0.0002309346,0.0001009395,0.0004232456,0.0002029808,0.0003028443,0.002070799],"category_scores_gemma":[0.0001080702,0.0001292311,0.0003072198,0.000178981,0.000198391,0.0002279166,0.0003090562,0.000669779,0.0004076397],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001339073,"about_ca_system_score_gemma":0.0001151578,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003761329,"about_ca_topic_score_gemma":0.0005111931,"domain_scores_codex":[0.9997798,0.00002396336,0.00001653985,0.00005531142,0.0000720512,0.00005226876],"domain_scores_gemma":[0.9997796,0.00003155886,0.00008436161,0.00003298546,0.00002339568,0.00004805928],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003030753,0.00001857636,0.0003662069,0.0000130906,0.000002759308,0.00001566077,0.000003141116,0.00001005372,0.9991065,0.00003108336,0.0000130303,0.0003897452],"study_design_scores_gemma":[0.000006212336,0.0006386404,0.02294843,0.000008519924,0.00001823367,0.0005615805,0.00004649802,0.0004450164,0.9734001,0.00004985866,0.001871235,0.000005650299],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930344,0.0006969376,0.003625106,0.0001381429,0.00002869807,0.00002527249,0.0008554206,0.00008747631,0.001508591],"genre_scores_gemma":[0.9907499,0.0004642291,0.004591292,0.0001481482,0.00001218643,0.00002730677,0.001164501,0.00003573232,0.002806736],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002070799,"threshold_uncertainty_score":0.00692749,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01779497692087419,"score_gpt":0.2213826847798641,"score_spread":0.2035877078589899,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}