{"id":"W4310463533","doi":"10.1128/spectrum.02064-22","title":"Genomic and Environmental Factors Shape the Active Gill Bacterial Community of an Amazonian Teleost Holobiont","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Fundação de Amparo à Pesquisa do Estado do Amazonas; Instituto Nacional de Ciência e Tecnologia Centro de Estudos das Adaptações da Biota Aquática da Amazônia; National Geographic Society; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Mitacs; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Government of Canada","keywords":"Biology; Bacterioplankton; Community structure; Ecology; Host (biology); Genetic structure; 16S ribosomal RNA; Relative species abundance; Abundance (ecology); Genetic variation; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008328483,0.0001602467,0.0001356175,0.0004425987,0.0003171028,0.0003703586,0.0001328197,0.000246775,0.001221231],"category_scores_gemma":[0.0003045015,0.0001387627,0.0001215843,0.0004509365,0.0003526541,0.0002017192,0.0003982155,0.0001412165,0.0001290708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002758506,"about_ca_system_score_gemma":0.0002129422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009828714,"about_ca_topic_score_gemma":0.02321251,"domain_scores_codex":[0.9998904,0.00001587497,0.000006132703,0.00004835781,0.0000129625,0.00002625175],"domain_scores_gemma":[0.999841,0.00002256297,0.0000660971,0.000008640395,0.00002439641,0.00003724463],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001980007,0.00003294854,0.8585496,0.00002719957,0.00002751195,0.000114535,0.001096259,0.00007918422,0.1364586,0.00005324768,0.00002257226,0.00334034],"study_design_scores_gemma":[0.000001315605,0.00003521251,0.9986957,0.000001565621,0.000006564459,0.00007120847,0.0004799841,0.00007269511,0.0005664098,0.00001151043,0.0000565591,0.00000128687],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997839,0.00001133921,0.00004005389,0.000002769594,1.870331e-7,0.000001209491,0.00009314237,5.848958e-7,0.00006680096],"genre_scores_gemma":[0.9996212,0.00001183723,0.0001138677,0.000005669177,5.714291e-7,0.000002863245,0.0001303453,0.000001048926,0.0001126631],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009828714,"threshold_uncertainty_score":0.01954299,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007575999241623986,"score_gpt":0.1904801054436208,"score_spread":0.1829041062019968,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}