{"id":"W4310493943","doi":"10.1038/s41588-022-01230-9","title":"The genomic and immune landscape of long-term survivors of high-grade serous ovarian cancer","year":2022,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Victoria; University of British Columbia","funders":"Cancer Council Tasmania; Cancer Council South Australia; Medical Research Council; Medical Research and Materiel Command; Genentech; Uniscientia Foundation; BC Cancer Foundation; Swiss Cancer Research Foundation; Cancer Council Victoria; Eisai; Cancer Australia; Cancer Council NSW; National Health and Medical Research Council; Cancer Research UK; Clovis Oncology; Peter MacCallum Cancer Centre; BeiGene; Genome British Columbia; Cancer Institute NSW; National Cancer Institute; Ovarian Cancer Australia; AstraZeneca; Eli Lilly and Company","keywords":"Biology; Ovarian cancer; Somatic cell; Transcriptome; Serous fluid; Immune system; Germline; DNA methylation; Phenotype; Survival analysis; Cancer; Gene; Genetics; Bioinformatics; Oncology; Internal medicine; Gene expression; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000122209,0.00008050739,0.0001628114,0.000326065,0.000263824,0.0004793201,0.0001655577,0.0002884978,0.001820757],"category_scores_gemma":[0.0008319221,0.00008487568,0.0001091456,0.0004438284,0.0002165451,0.0002619694,0.0002979874,0.0003187991,0.0001573723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001639039,"about_ca_system_score_gemma":0.0001779094,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001175259,"about_ca_topic_score_gemma":0.00178371,"domain_scores_codex":[0.9998751,0.00002762043,0.000005558816,0.00002678504,0.00001930739,0.00004558805],"domain_scores_gemma":[0.9996899,0.00008154578,0.0001090713,0.00002012656,0.00003206828,0.00006734482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00051425,0.00007215024,0.951238,0.00004358757,0.00009947026,0.0007037891,0.0004556967,0.0003188814,0.02414234,0.0005687112,0.0008321539,0.02101106],"study_design_scores_gemma":[0.000005395465,0.0001390312,0.995839,0.000008880699,0.00004096951,0.0009071064,0.000548924,0.0001766548,0.000595226,0.0004915668,0.001241968,0.000005267871],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977056,0.000998605,0.0000961512,0.0002452274,0.000007993012,0.000002688361,0.0002377213,0.000004463915,0.0007016331],"genre_scores_gemma":[0.9988192,0.0003869052,0.00003979975,0.0001079288,0.00002001169,0.000003407532,0.000226106,0.000003884279,0.0003928014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001820757,"threshold_uncertainty_score":0.006090999,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008226354714891852,"score_gpt":0.258725931734597,"score_spread":0.2504995770197051,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}