{"id":"W4310493943","doi":"10.1038/s41588-022-01230-9","title":"The genomic and immune landscape of long-term survivors of high-grade serous ovarian cancer","year":2022,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Victoria; University of British Columbia","funders":"Cancer Council Tasmania; Cancer Council South Australia; Medical Research Council; Medical Research and Materiel Command; Genentech; Uniscientia Foundation; BC Cancer Foundation; Swiss Cancer Research Foundation; Cancer Council Victoria; Eisai; Cancer Australia; Cancer Council NSW; National Health and Medical Research Council; Cancer Research UK; Clovis Oncology; Peter MacCallum Cancer Centre; BeiGene; Genome British Columbia; Cancer Institute NSW; National Cancer Institute; Ovarian Cancer Australia; AstraZeneca; Eli Lilly and Company","keywords":"Biology; Ovarian cancer; Somatic cell; Transcriptome; Serous fluid; Immune system; Germline; DNA methylation; Phenotype; Survival analysis; Cancer; Gene; Genetics; Bioinformatics; Oncology; Internal medicine; Gene expression; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001293164,0.0001096908,0.0002565,0.00004492071,0.0001079568,0.000006839057,0.0001139262,0.00008700279,0.0001167486],"category_scores_gemma":[0.000007046764,0.00007744768,0.00006111397,0.0001508595,0.00005899267,0.000006339149,0.0001114051,0.0002845795,3.36612e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006318584,"about_ca_system_score_gemma":0.0001230611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00035242,"about_ca_topic_score_gemma":0.000412319,"domain_scores_codex":[0.9991718,0.00004154009,0.0002210974,0.0001738263,0.0002419343,0.0001498248],"domain_scores_gemma":[0.9993513,0.00006862401,0.0001403989,0.0003325412,0.00005860641,0.00004859337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002447569,0.0002774981,0.9659016,0.000129822,0.000541469,0.00003852342,0.0004354401,0.0002238252,0.003141553,0.0003388299,0.0004561405,0.02827061],"study_design_scores_gemma":[0.001664835,0.000333248,0.9869411,0.00002611949,0.0002546579,0.00002940392,0.00006725438,0.00002795794,0.00889874,0.00007182916,0.00161449,0.00007033739],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9115596,0.08587988,0.000002855175,0.001559082,0.0004978513,0.0002819172,0.0001143586,0.00000675654,0.00009768912],"genre_scores_gemma":[0.9920452,0.007278622,0.0001913531,0.0001237988,0.0001059786,0.00004696021,0.00003022905,0.00002051402,0.000157305],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08048563,"threshold_uncertainty_score":0.3158225,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008226354714891852,"score_gpt":0.258725931734597,"score_spread":0.2504995770197051,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}