{"id":"W4310668216","doi":"10.1094/mpmi-09-22-0188-r","title":"Habitats Within the Plant Root Differ in Bacterial Network Topology and Taxonomic Assortativity","year":2022,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto Mississauga; University of Toronto","keywords":"Biology; Rhizosphere; Ecology; Habitat; Abiotic component; Phylum; Community structure; Community; Botany; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002745265,0.0001916635,0.0002041515,0.00006741984,0.0003748961,0.00004364106,0.0002085983,0.00008033449,0.000114736],"category_scores_gemma":[0.00003064708,0.000172239,0.00007482943,0.00008904298,0.00008638401,0.000006502709,0.0003137712,0.0004552157,0.000007473674],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006821776,"about_ca_system_score_gemma":0.0001089344,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000319553,"about_ca_topic_score_gemma":0.007255327,"domain_scores_codex":[0.9984924,0.000376517,0.0003079746,0.0004044543,0.00006462401,0.0003540302],"domain_scores_gemma":[0.9994191,0.0000544468,0.0001491824,0.0002957215,0.0000171368,0.00006442478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002599895,0.0001027247,0.005319396,0.000008625178,0.0000659081,0.00004673239,0.0001727997,0.0007748345,0.9780322,0.0004449964,0.01470835,0.0000634274],"study_design_scores_gemma":[0.003847248,0.001323111,0.1699927,0.00008315998,0.0001529837,0.00467828,0.001277471,0.0007274514,0.2133822,0.0005554362,0.6025045,0.001475533],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960463,0.0002752873,0.000365878,0.001104833,0.001066581,0.0003293261,0.0005875867,0.00001217318,0.000212012],"genre_scores_gemma":[0.997162,0.00002249887,0.0002264056,0.0009958219,0.0001510804,0.0001031514,0.001068537,0.00002443031,0.0002460256],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.76465,"threshold_uncertainty_score":0.7023702,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01177144497809625,"score_gpt":0.2409614998911072,"score_spread":0.229190054913011,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}