{"id":"W4310702751","doi":"10.1093/nar/gkac1103","title":"Response regulator PorX coordinates oligonucleotide signalling and gene expression to control the secretion of virulence factors","year":2022,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"European Social Fund; National Institute of Dental and Craniofacial Research; Politechnika Wrocławska; Narodowym Centrum Nauki; Generalitat de Catalunya; European Synchrotron Radiation Facility; Ministerio de Ciencia, Innovación y Universidades","keywords":"Biology; Effector; Response regulator; Phosphatase; Secretion; Mutagenesis; Gene; Genetics; Cell biology; Virulence; Oligonucleotide; Regulator; Biochemistry; Mutation; Phosphorylation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008298169,0.0002557522,0.0001897538,0.00009354712,0.0001027629,0.0002743819,0.0001141985,0.0002092826,0.001035646],"category_scores_gemma":[0.0000979688,0.0001082209,0.0001061209,0.00006523767,0.0002504061,0.0001950031,0.0003985184,0.0002784629,0.0003916794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002654932,"about_ca_system_score_gemma":0.0001922598,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002020526,"about_ca_topic_score_gemma":0.000192233,"domain_scores_codex":[0.9998995,0.00001642519,0.000003880737,0.00003061357,0.00002609493,0.00002343046],"domain_scores_gemma":[0.9999518,0.000007207971,0.00001498847,0.000004170492,0.000006398698,0.00001535767],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005851027,0.000005748552,0.000180552,0.000009114628,7.284735e-7,0.00006215872,0.00001014543,0.0001196681,0.9987726,0.0002211851,0.00001581882,0.0005437603],"study_design_scores_gemma":[0.00001920149,0.0001294804,0.005476255,0.000005356082,0.000004983498,0.0002813408,0.00008829772,0.006024699,0.984839,0.0002762863,0.002849524,0.000005681095],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901047,0.0005118016,0.007693835,0.0001036894,0.00001575674,0.00001225966,0.0001055387,0.0002025496,0.001249844],"genre_scores_gemma":[0.9944627,0.0002201662,0.002488428,0.00002264709,0.000005474622,0.00001034664,0.00009984137,0.00002323125,0.002667199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001035646,"threshold_uncertainty_score":0.003464639,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01882618035243229,"score_gpt":0.2925241569090297,"score_spread":0.2736979765565974,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}