{"id":"W4310710653","doi":"10.1007/978-1-0716-2883-6_5","title":"A Pangenome Approach to Detect and Genotype TE Insertion Polymorphisms","year":2022,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University Health Centre; McGill Genome Centre; McGill University","funders":"","keywords":"Genotype; Genetics; Biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004863905,0.0009884881,0.0007787332,0.001954074,0.0004968221,0.0008287868,0.0006206287,0.001198846,0.003373251],"category_scores_gemma":[0.001161752,0.0005601694,0.0008709573,0.001133622,0.0003800428,0.0006975413,0.001083306,0.001934582,0.0008817372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003992755,"about_ca_system_score_gemma":0.0004479256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009833795,"about_ca_topic_score_gemma":0.003218921,"domain_scores_codex":[0.9993181,0.0001205323,0.00002749999,0.0003189581,0.0001284336,0.00008646941],"domain_scores_gemma":[0.9993061,0.0002013673,0.0001305311,0.0001564437,0.0001063269,0.00009914819],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002089174,0.00009117713,0.0019618,0.00009797806,0.00007656022,0.00007970005,0.00005455647,0.0002088646,0.9812208,0.0007387152,0.0001316309,0.0151293],"study_design_scores_gemma":[0.0001167218,0.001115744,0.0541248,0.00006379345,0.0006191077,0.002682963,0.0002555167,0.01420081,0.9000251,0.00399213,0.02271803,0.00008529102],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3937466,0.002233448,0.5788103,0.0004278187,0.000248567,0.0009017628,0.009586751,0.003333341,0.01071146],"genre_scores_gemma":[0.5549856,0.001412631,0.425597,0.0008451529,0.0000675131,0.0006260562,0.006096419,0.0006229529,0.009746715],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003373251,"threshold_uncertainty_score":0.01128471,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02169441854622924,"score_gpt":0.3172018934463913,"score_spread":0.2955074749001621,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}