{"id":"W4310786235","doi":"10.1093/nargab/lqac092","title":"PBSIM3: a simulator for all types of PacBio and ONT long reads","year":2022,"lang":"en","type":"article","venue":"NAR Genomics and Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Computer science; Nanopore sequencing; High fidelity; Fidelity; Throughput; DNA sequencing; Operating system; Engineering; Wireless; Telecommunications","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009497161,0.001073672,0.0007606391,0.0003831752,0.000714979,0.0008389238,0.003000429,0.001559419,0.01045392],"category_scores_gemma":[0.003072535,0.0007802433,0.001291151,0.000654866,0.0004616512,0.001179377,0.001213256,0.002067212,0.002228819],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00117407,"about_ca_system_score_gemma":0.002725445,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008628036,"about_ca_topic_score_gemma":0.007192368,"domain_scores_codex":[0.9996321,0.00007078062,0.00002786986,0.00006102695,0.0001518857,0.00005617629],"domain_scores_gemma":[0.9989921,0.000475608,0.00006448113,0.0001132054,0.0002411365,0.0001134868],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0006081184,0.0003129188,0.007851405,0.0008218999,0.0002997571,0.0003997294,0.0005186273,0.841994,0.03348447,0.02856033,0.03364049,0.05150836],"study_design_scores_gemma":[0.00007584555,0.00005036743,0.0003020893,0.00001892381,0.00002527836,0.00004099294,0.00002549704,0.9626763,0.01048342,0.002815807,0.02345364,0.0000318228],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.09118356,0.0009122098,0.8099864,0.0008239198,0.0006811034,0.0005409612,0.01140594,0.05602521,0.02844068],"genre_scores_gemma":[0.3745959,0.001242953,0.5618132,0.001058316,0.0001206077,0.002731434,0.02300446,0.01449513,0.02093805],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01045392,"threshold_uncertainty_score":0.03497183,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01094207650555211,"score_gpt":0.2306906389217082,"score_spread":0.2197485624161561,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}