{"id":"W4311187468","doi":"10.1101/gr.276957.122","title":"Rates and spectra of de novo structural mutations in <i>Chlamydomonas reinhardtii</i>","year":2022,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Amgen (Canada); University of Toronto","funders":"H2020 European Research Council; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; European Commission","keywords":"Biology; Indel; Genetics; Mutation; Chlamydomonas reinhardtii; Mutation rate; Pseudogene; Structural variation; INDEL Mutation; Genome; Transposable element; Gene; Mutant; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003667316,0.0002536899,0.0002113994,0.000868393,0.0002575522,0.000394234,0.0004000888,0.000383321,0.0003452366],"category_scores_gemma":[0.0006869007,0.0002394833,0.000250364,0.000409918,0.0002308542,0.0002207484,0.0003542062,0.0004236505,0.0001427086],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005972041,"about_ca_system_score_gemma":0.0001626685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009570914,"about_ca_topic_score_gemma":0.00807685,"domain_scores_codex":[0.9995993,0.00002927744,0.00004037267,0.0001676982,0.0001005409,0.00006280436],"domain_scores_gemma":[0.9992316,0.0001898261,0.0002205738,0.0001182241,0.0001390721,0.0001006651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001185615,0.00003870702,0.05487356,0.00003783652,0.00004294675,0.00005884446,0.0001770494,0.0004390826,0.9396622,0.00006748769,0.00007297056,0.004410721],"study_design_scores_gemma":[0.000008701016,0.0001991833,0.815708,0.00001068315,0.0000554091,0.0003662205,0.000202069,0.002463277,0.1801226,0.00007398178,0.0007475636,0.00004229037],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988189,0.0001926293,0.0003880588,0.0000118625,0.000002158313,0.000004514843,0.0003991286,0.00003234023,0.0001503725],"genre_scores_gemma":[0.9976237,0.0001161721,0.0009345674,0.00002930315,0.000002133608,0.00001373219,0.001002411,0.00002375587,0.0002542693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009570914,"threshold_uncertainty_score":0.01903045,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03271412701659297,"score_gpt":0.3352766925678028,"score_spread":0.3025625655512098,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}