{"id":"W4311199302","doi":"10.1093/ve/veac109","title":"Genome Evolution and Early Introductions of the SARS-CoV-2 Omicron Variant in Mexico","year":2022,"lang":"en","type":"article","venue":"Virus Evolution","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Lineage (genetic); Genome; Biology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Evolutionary biology; Coronavirus disease 2019 (COVID-19); Genetics; Gene; Medicine; Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006106472,0.0001189421,0.0002155404,0.0003706744,0.0002516576,0.00001195521,0.0001554216,0.00006980997,0.00001129022],"category_scores_gemma":[0.0001337285,0.00010233,0.00008237331,0.0009035252,0.0001600775,0.0001100196,0.0002382284,0.0004374159,0.00001486675],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001048033,"about_ca_system_score_gemma":0.0003161682,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004841007,"about_ca_topic_score_gemma":0.0003697605,"domain_scores_codex":[0.9984419,0.0002087457,0.0003139128,0.0003252164,0.0004272354,0.0002830348],"domain_scores_gemma":[0.9993492,0.00003350487,0.0001021525,0.0004161912,0.00008296527,0.00001601109],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003103406,0.00020713,0.04610552,0.00003240773,0.00002604676,0.000007071521,0.0004043682,0.00002035088,0.9508634,0.001528432,0.0002881905,0.0002068066],"study_design_scores_gemma":[0.00184429,0.0004428675,0.8577207,0.0000302702,0.00006785586,0.0002533829,0.0003036231,0.0009762568,0.09871492,0.002114653,0.03736251,0.0001686221],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955721,0.001540191,0.0006605303,0.0008077567,0.0003535057,0.0005718194,0.00002881467,0.00003292802,0.0004323344],"genre_scores_gemma":[0.9985022,0.000006436366,0.00005890405,0.001124718,0.0001670188,0.00008134298,0.00000282247,0.00001814008,0.00003843674],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8521484,"threshold_uncertainty_score":0.7318187,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02715412207371054,"score_gpt":0.2970770292238307,"score_spread":0.2699229071501202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}