{"id":"W4311199302","doi":"10.1093/ve/veac109","title":"Genome Evolution and Early Introductions of the SARS-CoV-2 Omicron Variant in Mexico","year":2022,"lang":"en","type":"article","venue":"Virus Evolution","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Lineage (genetic); Genome; Biology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Evolutionary biology; Coronavirus disease 2019 (COVID-19); Genetics; Gene; Medicine; Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001543869,0.0001326966,0.000147497,0.0004715514,0.000381633,0.000442774,0.0001331116,0.0003090291,0.0005011348],"category_scores_gemma":[0.0003596609,0.0001232925,0.000228581,0.000550862,0.0001815292,0.0001788504,0.0002620701,0.0003417913,0.00006100193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006074524,"about_ca_system_score_gemma":0.0002156231,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009728007,"about_ca_topic_score_gemma":0.01204762,"domain_scores_codex":[0.9999235,0.000008670932,0.000003250757,0.00003637369,0.000008928817,0.00001933578],"domain_scores_gemma":[0.9998147,0.00002214739,0.0001109255,0.00001090817,0.00002270324,0.00001862779],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007586821,0.00007053081,0.9217141,0.00007995047,0.0001069782,0.0009897794,0.001983623,0.0008845105,0.0594729,0.0003552084,0.0002623318,0.01332127],"study_design_scores_gemma":[0.000005510895,0.00005561101,0.9967992,0.00001254314,0.00002440041,0.0001685253,0.0004104114,0.0003105679,0.0008330748,0.00002594551,0.00134871,0.000005468521],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994153,0.0001039029,0.00006279934,0.00001574854,0.000001930165,0.000002475487,0.0001944093,0.000002040512,0.0002014068],"genre_scores_gemma":[0.9980785,0.0002843751,0.0004067248,0.00002790215,0.000005351943,0.000009503365,0.0009593689,0.000003916846,0.0002244021],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009728007,"threshold_uncertainty_score":0.01934278,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02715412207371054,"score_gpt":0.2970770292238307,"score_spread":0.2699229071501202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}