{"id":"W4311285997","doi":"10.7326/m22-2699","title":"Monkeypox in Montréal: Epidemiology, Phylogenomics, and Public Health Response to a Large North American Outbreak","year":2022,"lang":"en","type":"article","venue":"Annals of Internal Medicine","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Jewish General Hospital; Public Health Agency of Canada; Cegep de Saint Jerome; Ste. Anne's Hospital; Centre Hospitalier de l’Université de Montréal; McGill University; University of Manitoba; Institut National de Santé Publique du Québec; Clinique Paro Excellence; Université de Montréal; McGill University Health Centre","funders":"","keywords":"Monkeypox; Outbreak; Medicine; Context (archaeology); Public health; Orthopoxvirus; Epidemiology; Demography; Virology; Vaccinia; Geography; Biology; Pathology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004275567,0.0001650697,0.0007597246,0.0006025415,0.0001288834,0.000002222275,0.0003990786,0.00003666605,0.0002144321],"category_scores_gemma":[0.003272697,0.0001363642,0.00006232822,0.0003913025,0.0004674796,0.00003751183,0.0005186264,0.0005745362,0.00003108282],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007134055,"about_ca_system_score_gemma":0.0001328212,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03318715,"about_ca_topic_score_gemma":0.006826642,"domain_scores_codex":[0.9961193,0.001889989,0.0006945952,0.0003517279,0.00007763395,0.0008667087],"domain_scores_gemma":[0.9981753,0.0009447876,0.0002930402,0.0002914893,0.00008522219,0.0002101345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01148236,0.0005367354,0.7588931,0.00003488452,0.0003420949,0.00009227941,0.006606515,0.00001594092,0.02136305,0.0005250819,0.09357493,0.106533],"study_design_scores_gemma":[0.001652667,0.004930286,0.650182,0.00004023337,0.000003239766,0.00009956592,0.003022225,0.000014084,0.0003344979,0.00009648512,0.3394944,0.0001302946],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9162479,0.01213342,0.0001063936,0.07072229,0.0001717052,0.0002455325,0.000253642,0.00001703413,0.000102098],"genre_scores_gemma":[0.97304,0.00113413,0.00003180508,0.02521374,0.0000348944,0.00003421999,0.00004326911,0.00001484162,0.0004530822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2459195,"threshold_uncertainty_score":0.9732509,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07374941407560241,"score_gpt":0.3677557204807102,"score_spread":0.2940063064051078,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}