{"id":"W4311344391","doi":"10.1099/acmi.0.000539.v1","title":"Misidentification of Cutibacterium acnes as Atopobium vaginae during routine bacterial screening of platelet concentrates using the VITEK 2 system","year":2022,"lang":"en","type":"preprint","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Blood Services; University of Ottawa","funders":"","keywords":"Microbiology; Biology; Bacterial vaginosis; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006922226,0.000311413,0.0004679768,0.00007912359,0.0002217474,0.0001265695,0.000634192,0.0002709131,0.0003023713],"category_scores_gemma":[0.0001894258,0.0002802042,0.0002434524,0.0001384551,0.0002126905,0.0000110019,0.001034217,0.0002627677,0.000001600293],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006433888,"about_ca_system_score_gemma":0.0002084971,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008809434,"about_ca_topic_score_gemma":0.0000304113,"domain_scores_codex":[0.9973469,0.0003817919,0.001038805,0.0006826533,0.0002801297,0.000269671],"domain_scores_gemma":[0.9973075,0.00003828185,0.001134524,0.001065249,0.0003908937,0.00006351065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001960699,0.00005152395,0.006179212,0.0006726963,0.0001525975,0.000001464247,0.0002725529,0.0005300334,0.9917284,0.0001280214,0.00002309665,0.00006430141],"study_design_scores_gemma":[0.0005007652,0.0000497092,0.01765382,0.000180329,0.0001032947,0.00003260012,0.002108827,0.0007200459,0.9780567,0.00001540027,0.0002728587,0.0003056505],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964271,0.0001830209,0.0009363994,0.00007384735,0.001319061,0.0006258812,0.0002197853,0.00004045655,0.0001745117],"genre_scores_gemma":[0.9966908,0.00003230021,0.001026412,0.00001170806,0.0003499168,0.00003265947,0.001430256,0.00004302137,0.0003829684],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01367173,"threshold_uncertainty_score":0.999965,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0236570226393401,"score_gpt":0.2810410063550063,"score_spread":0.2573839837156662,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}