{"id":"W4311816724","doi":"10.1099/mgen.0.000883","title":"Phylogenomic diversity of Vibrio species and other Gammaproteobacteria isolated from Pacific oysters (Crassostrea gigas) during a summer mortality outbreak","year":2022,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Shell (Canada); Vancouver Island University","funders":"School of Life Sciences, University of Technology Sydney; NSW Department of Primary Industries","keywords":"Gammaproteobacteria; Crassostrea; Outbreak; Biology; Pacific oyster; Vibrio; Diversity (politics); Ecology; Zoology; Fishery; Eastern oyster; Oyster; Virology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001709905,0.0003386905,0.0003914691,0.0008469755,0.0004010503,0.0005377162,0.0001530518,0.0002705413,0.0003333906],"category_scores_gemma":[0.0003605917,0.000176311,0.0004218436,0.0009250168,0.0003054473,0.0002102494,0.0005839273,0.0003733085,0.0001512153],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002062987,"about_ca_system_score_gemma":0.0003041029,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006817481,"about_ca_topic_score_gemma":0.009124797,"domain_scores_codex":[0.9997532,0.00001299722,0.00002377536,0.000100947,0.00005068309,0.00005847468],"domain_scores_gemma":[0.9996858,0.00003408201,0.00009086906,0.00001580695,0.00008548301,0.00008795966],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004368672,0.0001197828,0.4039148,0.0001487398,0.00009459005,0.0003815613,0.001793964,0.0002863734,0.5863281,0.00003716942,0.0001681625,0.006289937],"study_design_scores_gemma":[0.000002877118,0.0001264286,0.9949819,0.000010893,0.00003097896,0.0001775028,0.0007848205,0.0002122065,0.003262693,0.00001314403,0.0003900745,0.00000633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987503,0.00009516508,0.00007881453,0.00001212139,0.000002523715,0.000009209321,0.0008717025,0.000002810509,0.0001773919],"genre_scores_gemma":[0.9947547,0.0002691139,0.000505326,0.00005401592,0.000005506309,0.00003274235,0.003833338,0.000006353397,0.0005390215],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006817481,"threshold_uncertainty_score":0.01355559,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01979882120816434,"score_gpt":0.2240537656155914,"score_spread":0.2042549444074271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}