{"id":"W4311927976","doi":"10.1128/mbio.02878-22","title":"Population Genomics Provide Insights into the Global Genetic Structure of <i>Colletotrichum graminicola</i> , the Causal Agent of Maize Anthracnose","year":2022,"lang":"en","type":"article","venue":"mBio","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Ministry of Agriculture, Food and Rural Affairs","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Ministerio de Ciencia e Innovación; Center for Gastrointestinal Biology and Disease, School of Medicine, University of North Carolina at Chapel Hill; Nutrition Obesity Research Center, University of North Carolina; Conselho Nacional de Desenvolvimento Científico e Tecnológico; European Commission; Consejería de Educación, Junta de Castilla y León; Agencia Estatal de Investigación; Junta de Castilla y León; U.S. Department of Agriculture","keywords":"Biology; Genomics; Population; Population genomics; Mycosphaerella graminicola; Biotechnology; Evolutionary biology; Computational biology; Genetics; Genome; Pathogen; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005367884,0.0001121137,0.0001286352,0.00001612865,0.0002053101,0.00001072834,0.0002999321,0.00005340901,0.00001764082],"category_scores_gemma":[0.00003305155,0.00007174173,0.00009417799,0.0001546767,0.0000796161,0.000001864132,0.0002515748,0.00006875011,4.187389e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000370399,"about_ca_system_score_gemma":0.00009771949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002054969,"about_ca_topic_score_gemma":0.0002860611,"domain_scores_codex":[0.9991132,0.0001344828,0.0002408931,0.0001984381,0.000183538,0.0001294377],"domain_scores_gemma":[0.9993811,0.00001515106,0.0001759043,0.0003499737,0.00004188307,0.00003594152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001671139,0.0000950181,0.03696603,0.00002699671,0.00006909099,0.00000601874,0.0002020017,0.001323441,0.9587473,0.0002600028,0.0007707255,0.001366213],"study_design_scores_gemma":[0.0007945329,0.0007534183,0.8662878,0.000008705268,0.0002030495,0.00004830659,0.0006271861,0.0004603104,0.07664841,0.001527182,0.05232122,0.0003198345],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948936,0.003306573,0.00004710587,0.0000826309,0.0001794099,0.0003425969,0.001088153,0.000003741394,0.00005617593],"genre_scores_gemma":[0.9990529,0.0001438493,0.0001278347,0.0002125835,0.00007923322,0.00001688475,0.0003225504,0.00000900141,0.00003511041],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8820989,"threshold_uncertainty_score":0.2925543,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005558433193249931,"score_gpt":0.2170610666670638,"score_spread":0.2115026334738139,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}