{"id":"W4311975117","doi":"10.3390/genes13122322","title":"Deviations from Mendelian Inheritance on Bovine X-Chromosome Revealing Recombination, Sex-of-Offspring Effects and Fertility-Related Candidate Genes","year":2022,"lang":"en","type":"article","venue":"Genes","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Beef Cattle Research Council; Beef Farmers of Ontario; Alberta Beef Producers","keywords":"Pseudoautosomal region; Biology; Genetics; Single-nucleotide polymorphism; Y chromosome; Haplotype; Non-Mendelian inheritance; Candidate gene; X chromosome; Chromosome; Gene; Allele; Mitochondrial DNA; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00081816,0.0002266432,0.0002669962,0.0006937697,0.0001281075,0.0003140296,0.0001807695,0.0001538681,0.001085791],"category_scores_gemma":[0.001109964,0.00008538297,0.0001445904,0.0005333816,0.0002785818,0.00008487528,0.000177257,0.0002058154,0.00008907736],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001191771,"about_ca_system_score_gemma":0.0001167512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005422247,"about_ca_topic_score_gemma":0.0005958331,"domain_scores_codex":[0.999231,0.0002612312,0.00007958437,0.0002022114,0.0001720572,0.0000540522],"domain_scores_gemma":[0.9992853,0.0002953987,0.0002728999,0.00005277078,0.00004321216,0.00005037887],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001007433,0.00005388727,0.7911865,0.0001722704,0.0003144774,0.00203655,0.0005391727,0.0002472275,0.1812565,0.0005497141,0.0001127701,0.02252346],"study_design_scores_gemma":[0.00001381774,0.0001662136,0.9871431,0.00001182379,0.0000549716,0.004199015,0.0001358413,0.0004328961,0.007095391,0.0002066333,0.0005339056,0.000006403592],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975547,0.0009904081,0.000975476,0.00001923679,0.000003985297,0.000003377429,0.0001529771,0.000006422384,0.0002933953],"genre_scores_gemma":[0.9992482,0.0001528062,0.0003524798,0.000007196802,0.000003256574,0.000002059069,0.000131434,0.000002188392,0.0001003634],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001085791,"threshold_uncertainty_score":0.00432694,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009707686589498287,"score_gpt":0.2429980235480745,"score_spread":0.2332903369585762,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}