{"id":"W4311975117","doi":"10.3390/genes13122322","title":"Deviations from Mendelian Inheritance on Bovine X-Chromosome Revealing Recombination, Sex-of-Offspring Effects and Fertility-Related Candidate Genes","year":2022,"lang":"en","type":"article","venue":"Genes","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Beef Cattle Research Council; Beef Farmers of Ontario; Alberta Beef Producers","keywords":"Pseudoautosomal region; Biology; Genetics; Single-nucleotide polymorphism; Y chromosome; Haplotype; Non-Mendelian inheritance; Candidate gene; X chromosome; Chromosome; Gene; Allele; Mitochondrial DNA; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001706009,0.0001451161,0.0001902423,0.00004486461,0.0002607684,0.00001802164,0.0001531825,0.00007156229,0.00009364586],"category_scores_gemma":[0.00005362422,0.000148455,0.00006162807,0.0001003026,0.00006540547,0.000005956066,0.0001635426,0.00008895821,0.000002939117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001716597,"about_ca_system_score_gemma":0.00004042174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008653186,"about_ca_topic_score_gemma":0.00004018932,"domain_scores_codex":[0.9988425,0.0001280487,0.0003474976,0.0003487296,0.0001688164,0.0001644125],"domain_scores_gemma":[0.9994303,0.00005572204,0.0001423396,0.0002388568,0.00006321702,0.00006958891],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002097081,0.0003511434,0.03640327,0.0001521421,0.0002403158,0.00001378291,0.000529934,0.0005663667,0.8954819,0.0007358376,0.0002283895,0.06508724],"study_design_scores_gemma":[0.002153556,0.00183599,0.09790455,0.00007272551,0.00008860495,0.00001591856,0.001132652,0.0006262687,0.8742686,0.004900226,0.01636059,0.0006403323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945114,0.004241759,0.00008524947,0.0002928056,0.0002408094,0.0001611962,0.00008222676,0.00001869945,0.0003658163],"genre_scores_gemma":[0.9975016,0.000489942,0.0003334054,0.0002368405,0.0000595331,0.00005268271,0.0002038708,0.00001707031,0.00110511],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0644469,"threshold_uncertainty_score":0.6053821,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009707686589498287,"score_gpt":0.2429980235480745,"score_spread":0.2332903369585762,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}