{"id":"W4312058906","doi":"10.3390/jof8121315","title":"The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum","year":2022,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University","funders":"Office of Science; Ministry of Infrastructure and Water Management; China Scholarship Council; Joint Genome Institute; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Consejo Nacional de Ciencia y Tecnología; Academy of Finland; U.S. Department of Energy","keywords":"Aspergillus niger; Biology; Aspergillus nidulans; Sugar; Trichoderma reesei; Metabolome; Aspergillus; Phanerochaete; Metabolic pathway; Botany; Trichoderma; Penicillium; Phylum; Chrysosporium; Biochemistry; Metabolism; Gene; Enzyme; Lignin; Metabolite","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005238258,0.0001150982,0.0002561661,0.00008590965,0.0000804208,0.000006617878,0.0002850743,0.00005104065,0.000014878],"category_scores_gemma":[0.00006326538,0.00008669271,0.0002049287,0.0001835715,0.00002354073,0.000003882928,0.00005461244,0.0001677972,3.228532e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000135858,"about_ca_system_score_gemma":0.0001696783,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001345755,"about_ca_topic_score_gemma":0.00001233446,"domain_scores_codex":[0.9989356,0.00005869264,0.000447396,0.0001334323,0.0002514923,0.0001733986],"domain_scores_gemma":[0.999257,0.000006088029,0.0001917981,0.0002342322,0.0002373459,0.00007359018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002174583,0.00006231265,0.00002613396,0.00001787476,0.0001246257,9.5935e-7,0.0001794365,0.02990872,0.9619222,0.0001425646,0.002014962,0.005382759],"study_design_scores_gemma":[0.0003696958,0.0004214623,0.0004144292,0.00001178622,0.00008044724,0.00007419346,0.0001251048,0.0002464451,0.882793,0.00001318024,0.1153371,0.000113155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9807825,0.01660195,0.0008275636,0.0007965437,0.0006458056,0.0001201622,0.0001205205,0.000002989815,0.0001019434],"genre_scores_gemma":[0.9951271,0.002718511,0.000672182,0.0001097552,0.0002809564,0.000003103914,0.000006919619,0.00001850871,0.001062918],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1133222,"threshold_uncertainty_score":0.3535226,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01026012205920278,"score_gpt":0.2193226613696144,"score_spread":0.2090625393104116,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}