{"id":"W4312058906","doi":"10.3390/jof8121315","title":"The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum","year":2022,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University","funders":"Office of Science; Ministry of Infrastructure and Water Management; China Scholarship Council; Joint Genome Institute; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Consejo Nacional de Ciencia y Tecnología; Academy of Finland; U.S. Department of Energy","keywords":"Aspergillus niger; Biology; Aspergillus nidulans; Sugar; Trichoderma reesei; Metabolome; Aspergillus; Phanerochaete; Metabolic pathway; Botany; Trichoderma; Penicillium; Phylum; Chrysosporium; Biochemistry; Metabolism; Gene; Enzyme; Lignin; Metabolite","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001230258,0.0005561772,0.0002480292,0.0002608735,0.0002118181,0.0004066138,0.0002298051,0.0002149783,0.0004405294],"category_scores_gemma":[0.0001232143,0.0001227783,0.0003719101,0.0002936877,0.00013644,0.0002578394,0.0003441398,0.0004719826,0.0002726078],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002664225,"about_ca_system_score_gemma":0.0002655134,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002121858,"about_ca_topic_score_gemma":0.001661788,"domain_scores_codex":[0.9999143,0.00002043258,0.000009355163,0.00002935545,0.00001559593,0.00001101969],"domain_scores_gemma":[0.9999596,0.000008245354,0.000006696193,0.00001299133,0.00000476932,0.000007730886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001307739,0.00003757974,0.002058207,0.00006278711,0.00001511508,0.0001119828,0.00002351312,0.002802914,0.9881966,0.001252323,0.0000416764,0.00526661],"study_design_scores_gemma":[0.00004499155,0.0007553866,0.02526527,0.00006611015,0.0001267568,0.0009552306,0.0002843179,0.096172,0.8512596,0.006179534,0.01885285,0.00003807206],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9245153,0.0008516955,0.06916465,0.0001184952,0.00005983355,0.00005918917,0.001932322,0.0002462657,0.00305223],"genre_scores_gemma":[0.9618163,0.001194581,0.03288057,0.00003722751,0.000005115106,0.00006460105,0.002694297,0.00004510612,0.001262116],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002121858,"threshold_uncertainty_score":0.004219055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01026012205920278,"score_gpt":0.2193226613696144,"score_spread":0.2090625393104116,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}