{"id":"W4312207459","doi":"10.1099/mgen.0.000909","title":"At the threshold of symbiosis: the genome of obligately endosymbiotic ‘Candidatus Nebulobacter yamunensis’ is almost indistinguishable from that of a cultivable strain","year":2022,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Gordon and Betty Moore Foundation","keywords":"Obligate; Biology; Endosymbiosis; Candidatus; Genome; Symbiosis; Buchnera; Strain (injury); Genetics; Evolutionary biology; Gene; Botany; Bacteria; Plastid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002749925,0.0001718232,0.0002692215,0.00003086255,0.0002913098,0.00001487038,0.0007491332,0.0001001547,0.0003321538],"category_scores_gemma":[0.00001831894,0.0001357442,0.0002070077,0.0001287679,0.0002985956,0.00000349175,0.001138141,0.0001625417,0.000004744841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005530323,"about_ca_system_score_gemma":0.0001320908,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000717707,"about_ca_topic_score_gemma":0.00009154168,"domain_scores_codex":[0.9988735,0.0001012198,0.0003147182,0.0003016898,0.0001495082,0.0002593647],"domain_scores_gemma":[0.9988972,0.0000313452,0.000357723,0.0006013355,0.000074141,0.00003824116],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002818274,0.00008805803,0.01727249,0.00002955191,0.0002603203,0.000001983369,0.001343794,0.0001677582,0.9786694,0.00002646908,0.0017853,0.00007301816],"study_design_scores_gemma":[0.0006883607,0.000234659,0.01486363,0.00001161669,0.0001143384,0.00001519848,0.0008676628,0.000009880409,0.9687401,0.0001160914,0.01416147,0.0001769763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893795,0.001486486,0.00000786477,0.00014013,0.0001612614,0.0003786274,0.007975642,0.000003148027,0.0004673169],"genre_scores_gemma":[0.9981757,0.0001035389,0.0001171438,0.0004435214,0.0000661078,0.000006892985,0.0006580554,0.00001902559,0.0004099562],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01237617,"threshold_uncertainty_score":0.5535489,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0147356663043685,"score_gpt":0.1995811832349206,"score_spread":0.1848455169305521,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}