{"id":"W4312207459","doi":"10.1099/mgen.0.000909","title":"At the threshold of symbiosis: the genome of obligately endosymbiotic ‘Candidatus Nebulobacter yamunensis’ is almost indistinguishable from that of a cultivable strain","year":2022,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Gordon and Betty Moore Foundation","keywords":"Obligate; Biology; Endosymbiosis; Candidatus; Genome; Symbiosis; Buchnera; Strain (injury); Genetics; Evolutionary biology; Gene; Botany; Bacteria; Plastid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001276078,0.0002807522,0.0002744366,0.0002405729,0.0002305571,0.0006420451,0.0002158055,0.0005110267,0.0006475973],"category_scores_gemma":[0.0003612259,0.0001694146,0.0003073141,0.0003671227,0.0003324116,0.0004509247,0.0004574727,0.0004722445,0.000268348],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001418123,"about_ca_system_score_gemma":0.0001709945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001113938,"about_ca_topic_score_gemma":0.001187029,"domain_scores_codex":[0.9997907,0.00001671873,0.00001473999,0.00009568998,0.00004529072,0.00003682204],"domain_scores_gemma":[0.999701,0.00006891048,0.00008570103,0.00005722847,0.00003640894,0.00005074951],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001385257,0.000007593018,0.002614127,0.00007191679,0.00001946705,0.0000775073,0.00009026496,0.00003735986,0.9950087,0.00004562868,0.00001889083,0.001870053],"study_design_scores_gemma":[0.00002212235,0.0004324732,0.5434774,0.00004612383,0.0001933011,0.003130394,0.000633189,0.0009985572,0.4444069,0.0003793741,0.006232121,0.00004811682],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974516,0.0008660642,0.0007216046,0.00003480559,0.000009409621,0.000005096784,0.0004627538,0.00003729767,0.0004113118],"genre_scores_gemma":[0.9962436,0.0002256938,0.001077553,0.00006007495,0.00000469157,0.00001164262,0.001909667,0.00002311343,0.0004439782],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001113938,"threshold_uncertainty_score":0.002214909,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0147356663043685,"score_gpt":0.1995811832349206,"score_spread":0.1848455169305521,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}