{"id":"W4313236350","doi":"10.3201/eid2901.220930","title":"Genomic Confirmation of <i>Borrelia garinii</i>, United States","year":2023,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biologické Centrum, Akademie Věd České Republiky; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Steven and Alexandra Cohen Foundation; Akademie Věd České Republiky; Ministerstvo Zdravotnictví Ceské Republiky; Global Lyme Alliance","keywords":"Borrelia garinii; Borrelia; Lyme disease; Borrelia burgdorferi; Biology; Sensu; Genetics; Virology; Zoology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001400486,0.0002718904,0.0003567236,0.0007533702,0.0002868664,0.00002659255,0.000191705,0.0001325823,0.001101696],"category_scores_gemma":[0.0002953967,0.0002802778,0.0002072045,0.001072728,0.0002434655,0.0001367787,0.0001212555,0.0001738284,0.001765684],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007681326,"about_ca_system_score_gemma":0.0001049241,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001064611,"about_ca_topic_score_gemma":0.00006064148,"domain_scores_codex":[0.9983938,0.0002300041,0.0004737464,0.0003488763,0.00007721993,0.000476357],"domain_scores_gemma":[0.9987624,0.0003140969,0.0002606359,0.0003890235,0.0002057294,0.00006806157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001591742,0.0006946772,0.8743157,0.000257652,0.0009847318,0.00002151407,0.000932249,0.01433007,0.03724797,0.001909841,0.06654764,0.002598804],"study_design_scores_gemma":[0.003099327,0.0004411065,0.9033418,0.0001182112,0.0005428946,0.00005296739,0.0006614332,0.0007241072,0.009184923,0.00183262,0.07923387,0.0007667788],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938381,0.001385345,0.000120049,0.0001167182,0.001370372,0.0003120207,0.0003717628,0.001428749,0.001056868],"genre_scores_gemma":[0.9961215,0.0005702511,0.000002208531,0.0002396733,0.00005975062,0.00007601795,0.002389551,0.00004954815,0.0004915246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0290261,"threshold_uncertainty_score":0.999965,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008958437451923363,"score_gpt":0.2441141671725418,"score_spread":0.2351557297206184,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}