{"id":"W4313236350","doi":"10.3201/eid2901.220930","title":"Genomic Confirmation of <i>Borrelia garinii</i>, United States","year":2023,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biologické Centrum, Akademie Věd České Republiky; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Steven and Alexandra Cohen Foundation; Akademie Věd České Republiky; Ministerstvo Zdravotnictví Ceské Republiky; Global Lyme Alliance","keywords":"Borrelia garinii; Borrelia; Lyme disease; Borrelia burgdorferi; Biology; Sensu; Genetics; Virology; Zoology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001779332,0.0002259539,0.00009395003,0.0007360328,0.0006839709,0.0002953119,0.0001728174,0.0001749531,0.001846504],"category_scores_gemma":[0.0005171492,0.00008884526,0.0001158852,0.0005749503,0.0001590159,0.00007036718,0.000260571,0.0002215598,0.0002909049],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004615524,"about_ca_system_score_gemma":0.0008761612,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.09031207,"about_ca_topic_score_gemma":0.1617751,"domain_scores_codex":[0.9998685,0.00001527411,0.00001292862,0.00003301872,0.00003505653,0.00003521623],"domain_scores_gemma":[0.9995719,0.00005338028,0.0000841881,0.00002832244,0.0001647817,0.0000974517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000491462,0.0001391213,0.4557726,0.0001635856,0.00007262129,0.004785031,0.002725446,0.000219064,0.502858,0.0005210688,0.005186269,0.02706583],"study_design_scores_gemma":[0.00001998565,0.000198571,0.9392801,0.00008211545,0.00005279959,0.001975677,0.001729676,0.0002466493,0.03340111,0.00008133388,0.02292278,0.000009114197],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860503,0.0003999124,0.0006440373,0.0003527142,0.00003155954,0.00006429213,0.005113132,0.00005066538,0.007293407],"genre_scores_gemma":[0.9872934,0.000480504,0.00220493,0.0004458632,0.00001526794,0.00003432631,0.006921265,0.00001823117,0.002586254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09031207,"threshold_uncertainty_score":0.1795728,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008958437451923363,"score_gpt":0.2441141671725418,"score_spread":0.2351557297206184,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}