{"id":"W4313321122","doi":"10.1099/jmm.0.001615","title":"Characterization of invasive meningococcal disease case isolates in Atlantic Canada, 2014 to 2020: spatial–temporal variations of clones and predicted meningococcal B vaccine coverage","year":2022,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Government of Manitoba; Government of Prince Edward Island; Government of New Brunswick; Memorial University of Newfoundland; Public Health Agency of Canada; Nova Scotia Health Authority; Government of Newfoundland and Labrador; Dalhousie University; Government of Nova Scotia","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Neisseria meningitidis; Multilocus sequence typing; Serotype; Meningococcal disease; Biology; Typing; Meningococcal vaccine; Molecular epidemiology; Locus (genetics); Nova scotia; Virology; Microbiology; Genotype; Genetics; Geography; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004418169,0.0004146545,0.0003080119,0.001998389,0.0009398946,0.001011574,0.0007783811,0.0002971794,0.0009920511],"category_scores_gemma":[0.001444904,0.0001850707,0.0003782827,0.003118484,0.0004296408,0.0001960226,0.0005212479,0.0003399891,0.0001713874],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01184836,"about_ca_system_score_gemma":0.01491036,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9817624,"about_ca_topic_score_gemma":0.9855232,"domain_scores_codex":[0.999435,0.00001715407,0.00002935703,0.0001012324,0.0001914417,0.0002258408],"domain_scores_gemma":[0.9982314,0.00007711974,0.0003598366,0.00004921821,0.0009301694,0.0003523297],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001025992,0.00001194474,0.9930648,0.00003197385,0.00003542475,0.0001376445,0.0002346638,0.0002310614,0.001022443,0.00003344934,0.0007440871,0.004349904],"study_design_scores_gemma":[0.00000190789,0.00001343356,0.9982525,0.00001428801,0.00001460387,0.00008655605,0.0004272003,0.0003206295,0.0001994893,0.000007644014,0.0006581909,0.00000362164],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867874,0.0006774769,0.0002563523,0.0001660251,0.00001093804,0.00004217731,0.01046664,0.00001855141,0.001574385],"genre_scores_gemma":[0.9913914,0.0005449707,0.0004385547,0.00008785258,0.000006395036,0.00001533084,0.006828128,0.000006540131,0.0006806896],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01823759,"threshold_uncertainty_score":0.08596629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004895257346997753,"score_gpt":0.215846794722846,"score_spread":0.2109515373758483,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}