{"id":"W4313335355","doi":"10.1101/2022.12.30.522336","title":"Intra- and inter-species interactions drive early phases of invasion in mice gut microbiota","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada Research Chairs; University of Toronto; Université de Sherbrooke; Université de Montréal; Cegep Edouard Montpetit","funders":"University of Toronto; Canada Research Chairs; National Research Foundation","keywords":"Biology; Microbiome; Gut flora; Escherichia coli; Evolutionary dynamics; Bacteria; Genetics; Evolutionary biology; Microbiology; Gene; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004305194,0.0002332817,0.0002427396,0.0004007405,0.0002400709,0.0004160659,0.0002561683,0.000399647,0.00178933],"category_scores_gemma":[0.0004036803,0.0002610096,0.0002971712,0.0001593945,0.0002667272,0.0003095787,0.0004776653,0.0008762234,0.0004219052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003396696,"about_ca_system_score_gemma":0.0002773759,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005305063,"about_ca_topic_score_gemma":0.0009428922,"domain_scores_codex":[0.9996855,0.00004547065,0.00002126091,0.00007409057,0.0001089718,0.00006476002],"domain_scores_gemma":[0.9994326,0.00007670569,0.0002161796,0.00005894009,0.00007060673,0.0001449025],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001771968,0.00003625466,0.004439158,0.00004196404,0.000009603095,0.00003800402,0.00004875162,0.0002189101,0.9912304,0.000202456,0.00021077,0.003346594],"study_design_scores_gemma":[0.00004349309,0.000718065,0.1653999,0.00004595574,0.00004049203,0.0003429716,0.0002104769,0.01566254,0.8113935,0.001021626,0.005070186,0.00005062542],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9874595,0.0004493505,0.009664947,0.0002185793,0.00003470909,0.00002217172,0.0009260761,0.000347101,0.0008775796],"genre_scores_gemma":[0.9876783,0.0002872914,0.008386114,0.0002458377,0.00001881389,0.00007156262,0.0008389422,0.0001191141,0.002354013],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00178933,"threshold_uncertainty_score":0.005985916,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01416598368497296,"score_gpt":0.2417365176240677,"score_spread":0.2275705339390947,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}