{"id":"W4313339595","doi":"10.1186/s13099-022-00523-y","title":"Prevalence of pks + bacteria and enterotoxigenic Bacteroides fragilis in patients with colorectal cancer","year":2022,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Cegep Edouard Montpetit; Centre Hospitalier de l’Université de Montréal","funders":"Ministère de la Santé et des Services sociaux; Ministère de la Santé; Canadian Institutes of Health Research; Université de Montréal; Institute of Cancer Research; Institut Du Cancer de Montréal","keywords":"Bacteroides fragilis; Medical microbiology; Colorectal cancer; Medicine; Microbiology; Parasitology; Cancer; Bacteria; Bacteroides; Internal medicine; Biology; Antibiotics; Pathology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008560804,0.00009961986,0.0001209725,0.00003920961,0.00006029036,0.000004869385,0.00009910842,0.00004309884,0.0001506009],"category_scores_gemma":[0.000008173507,0.00009293775,0.00002573064,0.00006384964,0.00004898698,0.000002954587,0.0001460568,0.00007838403,4.751657e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002585537,"about_ca_system_score_gemma":0.00006947028,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004187143,"about_ca_topic_score_gemma":0.0001349447,"domain_scores_codex":[0.9992464,0.00007237313,0.0001586653,0.0002570824,0.00008060114,0.0001849281],"domain_scores_gemma":[0.9996906,0.000004917928,0.00008319703,0.0001405874,0.00003600613,0.00004472215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001709288,0.00005926736,0.4942841,0.00004801983,0.000009067156,7.228914e-7,0.0001082657,0.00000434997,0.5050176,8.929876e-7,0.0000333272,0.000263462],"study_design_scores_gemma":[0.0007839272,0.0006797379,0.9742603,0.00001587546,0.00001114751,0.000003492961,0.00004614675,0.000002475126,0.02336628,0.000001652632,0.0007259006,0.0001031086],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985104,0.0003885102,0.000003680774,0.0000176539,0.00006903188,0.0003216968,0.0006624447,0.000003207631,0.00002343725],"genre_scores_gemma":[0.9993044,0.0001680486,0.000143717,0.00008814048,0.00001866528,0.00007873739,0.0001073388,0.00001306743,0.00007787371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4816513,"threshold_uncertainty_score":0.3789891,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004163086901539294,"score_gpt":0.2131040867078597,"score_spread":0.2089409998063204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}