{"id":"W4313423632","doi":"10.4049/jimmunol.208.supp.102.14","title":"Profiling MHC-I and MHC-II canonical and out-of-frame epitopes from SARS-CoV-2 and seasonal human coronavirus infected human cells","year":2022,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"","keywords":"Biology; Virology; Major histocompatibility complex; Epitope; Coronavirus; MHC class I; Immunity; T cell; Antigen; Immune system; Immunology; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Disease; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006069457,0.0001350776,0.00009623961,0.0001397408,0.0001037888,0.0001636626,0.00006320267,0.0001505064,0.001184478],"category_scores_gemma":[0.00007661824,0.00005832791,0.00008536425,0.0001396514,0.00006852081,0.00007897046,0.000113985,0.0001526041,0.0002453246],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005714627,"about_ca_system_score_gemma":0.00005582974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003015642,"about_ca_topic_score_gemma":0.000323091,"domain_scores_codex":[0.9999492,0.000007048558,0.000003703145,0.00001254492,0.00001195147,0.00001554016],"domain_scores_gemma":[0.9999696,0.000007678955,0.000004453394,0.000004052124,0.000007015747,0.000007165263],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009603219,0.000009411609,0.002365259,0.00001201622,0.000002775073,0.00006950743,0.0000327223,0.00002907261,0.9966343,0.00001592785,0.00001824204,0.0007148247],"study_design_scores_gemma":[0.00003269974,0.001118136,0.2625476,0.00001503255,0.000033787,0.002674215,0.0007078991,0.003015796,0.7256873,0.0001448793,0.004011017,0.00001160563],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987406,0.0001379256,0.0004690022,0.00000910261,0.000003789632,0.00001173809,0.0001912877,0.00000385352,0.0004326722],"genre_scores_gemma":[0.9970281,0.0002061819,0.0009372898,0.0000370175,0.000007814585,0.00002725075,0.0008507171,0.000004066273,0.0009015715],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001184478,"threshold_uncertainty_score":0.003962398,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06304131516137117,"score_gpt":0.3670680632827872,"score_spread":0.3040267481214161,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}