{"id":"W4313436906","doi":"10.3390/jof9010002","title":"Independent Evolution Has Led to Distinct Genomic Signatures in Dutch Elm Disease-Causing Fungi and Other Vascular Wilts-Causing Fungal Pathogens","year":2022,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Genome Canada","keywords":"Biology; Wilt disease; Dutch elm disease; Fungus; Verticillium; Gene; Fusarium wilt; Secondary metabolite; Pathogenic fungus; Phylogenetic tree; Phylogenetics; Botany; Genetics; Fusarium oxysporum","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005563619,0.0002227148,0.0002790827,0.0002222915,0.000251798,0.00007439961,0.0001503755,0.00008528709,0.0000740655],"category_scores_gemma":[0.00009228648,0.000213655,0.0002188418,0.0001709806,0.00003593239,0.0000141122,0.0002550413,0.0002825262,0.000001510082],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001474467,"about_ca_system_score_gemma":0.0002527706,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000168262,"about_ca_topic_score_gemma":0.00004381279,"domain_scores_codex":[0.9982777,0.0002087541,0.0004364346,0.0003328593,0.0004054464,0.0003388031],"domain_scores_gemma":[0.9991276,0.0000290958,0.000239858,0.0002211651,0.00008110947,0.0003011224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007493511,0.0001722973,0.1084636,0.00002722973,0.0001208525,0.00056105,0.0001195698,0.00570966,0.8825747,0.0000210124,0.0005749639,0.0009056304],"study_design_scores_gemma":[0.001859531,0.0007019328,0.9688868,0.0001248852,0.0003425228,0.0006071705,0.0004280788,0.001697807,0.002444337,0.0001285781,0.02212409,0.0006542568],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9727479,0.02468107,0.001312068,0.00007957254,0.0002927148,0.0002081769,0.0006230814,0.00000611578,0.00004935414],"genre_scores_gemma":[0.9987705,0.0001528063,0.0002567454,0.0003170626,0.0003643863,0.00001022701,0.00003301909,0.00003513911,0.00006012572],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8801304,"threshold_uncertainty_score":0.8712597,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01259354347866525,"score_gpt":0.2267390321479777,"score_spread":0.2141454886693125,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}