{"id":"W4313436906","doi":"10.3390/jof9010002","title":"Independent Evolution Has Led to Distinct Genomic Signatures in Dutch Elm Disease-Causing Fungi and Other Vascular Wilts-Causing Fungal Pathogens","year":2022,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Genome Canada","keywords":"Biology; Wilt disease; Dutch elm disease; Fungus; Verticillium; Gene; Fusarium wilt; Secondary metabolite; Pathogenic fungus; Phylogenetic tree; Phylogenetics; Botany; Genetics; Fusarium oxysporum","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003494654,0.0002958612,0.0004204453,0.001224192,0.0004706528,0.0006597715,0.0002294479,0.000422988,0.001208841],"category_scores_gemma":[0.0009387608,0.0002165484,0.0007413914,0.001650189,0.0002612665,0.0005546253,0.0006015042,0.0004251875,0.0005330832],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003370405,"about_ca_system_score_gemma":0.0002660734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00166717,"about_ca_topic_score_gemma":0.003519851,"domain_scores_codex":[0.9996841,0.00002068853,0.00001964275,0.0001652144,0.00005275646,0.00005752841],"domain_scores_gemma":[0.9995154,0.0001142283,0.0001517885,0.00005149972,0.00007478117,0.00009218984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009929582,0.00007817069,0.1424423,0.0006403767,0.0003908792,0.00103396,0.0008789662,0.001624848,0.8224134,0.0006297217,0.0004939774,0.02838052],"study_design_scores_gemma":[0.00001742514,0.0001202921,0.9779895,0.00005397129,0.0001889879,0.001057738,0.0002864758,0.001884485,0.009943382,0.000247514,0.008182652,0.00002760525],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927472,0.001708772,0.001499079,0.00003545293,0.00001406998,0.00001303054,0.002689412,0.0000665433,0.001226457],"genre_scores_gemma":[0.9786073,0.001287714,0.003899526,0.0001451455,0.00001904583,0.0000407232,0.01446835,0.0001124959,0.001419734],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00166717,"threshold_uncertainty_score":0.004043996,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01259354347866525,"score_gpt":0.2267390321479777,"score_spread":0.2141454886693125,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}