{"id":"W4313471230","doi":"10.3390/v15010128","title":"Molecular Epidemiology of HIV-1 in Ghana: Subtype Distribution, Drug Resistance and Coreceptor Usage","year":2022,"lang":"en","type":"article","venue":"Viruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; AIDS Vancouver; Simon Fraser University","funders":"Canadian Institutes of Health Research; National Nuclear Security Administration; U.S. Department of Energy","keywords":"Subtyping; Molecular epidemiology; Drug resistance; Genetic diversity; Virology; Biology; Lentivirus; Human immunodeficiency virus (HIV); Genome; Genetics; Genotype; Gene; Medicine; Viral disease; Population; Environmental health","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000402908,0.00008005385,0.0002264232,0.00006030214,0.0001107038,0.000001058484,0.0001101311,0.0000408335,0.0006930107],"category_scores_gemma":[0.0002721938,0.00007245208,0.00003003997,0.0001419813,0.0002274455,0.000025884,0.0001248088,0.0001703157,0.0001005224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005720414,"about_ca_system_score_gemma":0.00005069216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002749642,"about_ca_topic_score_gemma":0.000163698,"domain_scores_codex":[0.9986893,0.00062767,0.000210439,0.0001971613,0.00002566537,0.0002497915],"domain_scores_gemma":[0.999381,0.0003530919,0.00007100285,0.0001551766,0.00002004428,0.0000196834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001047671,0.0004861132,0.8597338,0.00004604862,0.0002151771,0.00008128753,0.0006709449,0.00001545517,0.07107586,0.009960744,0.05561388,0.001053017],"study_design_scores_gemma":[0.005070663,0.0005400621,0.3065051,0.00004829378,0.00005406899,0.00004019404,0.001149675,0.000005060033,0.1452961,0.00175599,0.5391121,0.0004227507],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9785138,0.01939167,0.00004333958,0.0004393541,0.00008297247,0.0001468913,0.001207313,0.00001335079,0.000161285],"genre_scores_gemma":[0.9981055,0.0001486566,0.00004160131,0.0001362801,0.000003113754,0.00005927497,0.0005601316,0.000005604022,0.0009398328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5532287,"threshold_uncertainty_score":0.7587981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02482569369899479,"score_gpt":0.2868745044932633,"score_spread":0.2620488107942685,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}