{"id":"W4313478292","doi":"10.1101/2023.01.02.522471","title":"Genomics of the “tumorigenes” clade of the family <i>Rhizobiaceae</i> and description of <i>Rhizobium rhododendri</i> sp. nov.","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; German Network for Bioinformatics Infrastructure; Hebrew University of Jerusalem; Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft","keywords":"Biology; Rhizobium; Clade; Genome; Synteny; Phylogenetic tree; Genetics; Botany; Rhizobiaceae; Gene; Symbiosis; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001551613,0.0003828519,0.0003098341,0.0005375177,0.0002444313,0.0003343943,0.0002105801,0.0002732409,0.0003417466],"category_scores_gemma":[0.0002161041,0.0001569717,0.0004771824,0.0005950863,0.0001261037,0.0001781758,0.0003144676,0.0004625214,0.0003448402],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002211495,"about_ca_system_score_gemma":0.0002992974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001949308,"about_ca_topic_score_gemma":0.001961845,"domain_scores_codex":[0.9998217,0.00002474982,0.00001730675,0.00006085869,0.00003997236,0.00003543524],"domain_scores_gemma":[0.9997867,0.00002922453,0.00007519585,0.00002657931,0.00003818485,0.0000441751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001096122,0.00002692545,0.004386256,0.0000722051,0.00001491438,0.0001482388,0.00009813555,0.00009276909,0.9926945,0.00006495513,0.00007561388,0.002215922],"study_design_scores_gemma":[0.00005735323,0.0007025695,0.5891694,0.0001176107,0.0003723597,0.004639958,0.001184548,0.006744182,0.3703668,0.0003584637,0.02622202,0.00006458891],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988278,0.001107185,0.004407426,0.0000989702,0.00001947858,0.00008185332,0.00455063,0.00008184528,0.001374722],"genre_scores_gemma":[0.9683327,0.0006018351,0.009580803,0.0001071001,0.00001677944,0.00007008082,0.02011807,0.00007010702,0.001102557],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001949308,"threshold_uncertainty_score":0.003875911,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02441492745162362,"score_gpt":0.1917123352187776,"score_spread":0.167297407767154,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}