{"id":"W4313489025","doi":"10.1128/mra.01108-22","title":"Complete Genome Sequence of Vibrio natriegens Strain PWH3a","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; University of British Columbia","funders":"British Columbia Knowledge Development Fund; Ministry of Technology, Innovation and Citizens' Services; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Prophage; Biology; Whole genome sequencing; Genome; Strain (injury); Gene; Genetics; Transfer RNA; Complete sequence; Ribosomal RNA; Sequence (biology); RNA; Computational biology; Escherichia coli; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002608412,0.0007721618,0.0008230198,0.001391779,0.0007716171,0.0005054513,0.0005501835,0.0005991383,0.00343903],"category_scores_gemma":[0.000474389,0.000347213,0.0006747799,0.002936592,0.0003010314,0.0003907963,0.0004890822,0.001209006,0.003389315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004464894,"about_ca_system_score_gemma":0.00170088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009220428,"about_ca_topic_score_gemma":0.005154122,"domain_scores_codex":[0.9998041,0.00001775983,0.00002319692,0.00005075242,0.00006984451,0.00003431474],"domain_scores_gemma":[0.9996073,0.00007523988,0.00006766466,0.00004094347,0.0001171722,0.00009177302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001626457,0.0002250189,0.003250109,0.001211066,0.0000534165,0.0006223538,0.0003261635,0.0009401412,0.9545609,0.0006084724,0.006009887,0.03056605],"study_design_scores_gemma":[0.0009760327,0.001754082,0.35553,0.0005813716,0.0007444821,0.003556917,0.00131283,0.005046037,0.2834008,0.003094157,0.3436755,0.0003278152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.429015,0.004597896,0.02004253,0.0008612645,0.0004091162,0.0005688101,0.5345656,0.0009956848,0.00894401],"genre_scores_gemma":[0.1455504,0.002595702,0.01892319,0.0001864955,0.00008576586,0.0003785563,0.8273486,0.0003106277,0.004620628],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.009220428,"threshold_uncertainty_score":0.01833349,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02992072399138378,"score_gpt":0.2551094472886683,"score_spread":0.2251887232972845,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}