{"id":"W4313682117","doi":"10.1186/s13148-022-01417-1","title":"Sperm DNA methylome abnormalities occur both pre- and post-treatment in men with Hodgkin disease and testicular cancer","year":2023,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill Genome Centre; McGill University; Jewish General Hospital; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Génome Québec; Compute Canada; McGill University","keywords":"Human genetics; Testicular cancer; Disease; Reproductive medicine; DNA methylation; Cancer; Medicine; Sperm bank; Biology; Sperm; Oncology; Bioinformatics; Internal medicine; Physiology; Gynecology; Pregnancy; Genetics; Infertility; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004458124,0.0002316522,0.0002917421,0.00006717705,0.00007023873,0.00004209564,0.00009479643,0.0001689775,0.00000829514],"category_scores_gemma":[0.0003092082,0.0001870824,0.00006167887,0.0001404426,0.0002582871,0.000004778033,0.0001360869,0.00009437105,0.000003166974],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001737456,"about_ca_system_score_gemma":0.0001712074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002124057,"about_ca_topic_score_gemma":0.0003905011,"domain_scores_codex":[0.998366,0.0001684931,0.0004497883,0.0005454535,0.0001498691,0.0003203789],"domain_scores_gemma":[0.9989843,0.0001842038,0.0001038371,0.0003485412,0.00007792851,0.0003012174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003877351,0.0001972777,0.9466993,0.00007510664,0.0001571922,0.00004930584,0.0002434037,0.001130733,0.03233363,0.00007917189,0.00005062192,0.01859652],"study_design_scores_gemma":[0.001295333,0.001272939,0.9774089,0.00003754079,0.0001157082,0.000001321836,0.0001064892,0.0009413608,0.01136225,0.0004327748,0.006711463,0.0003139021],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898679,0.008948874,0.0001519282,0.0002816966,0.00007463891,0.0004052001,0.0001121312,0.00001918814,0.0001384273],"genre_scores_gemma":[0.9738796,0.02413351,0.0006627119,0.0001899724,0.0002171364,0.0000794656,0.0001138163,0.00003671737,0.0006870573],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03070961,"threshold_uncertainty_score":0.7628998,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02771362361143754,"score_gpt":0.3473643172754855,"score_spread":0.319650693664048,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}