{"id":"W4313783106","doi":"10.1101/2023.01.07.523123","title":"Innate immunity can distinguish beneficial from pathogenic rhizosphere microbiota","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Innate immune system; Pathogen; Virulence; Immune system; Pseudomonas syringae; Microbiology; Rhizosphere; Immunity; Plant Immunity; Pathogenic bacteria; Mutant; Bacteria; Genetics; Gene; Arabidopsis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003285041,0.0003371178,0.0002316597,0.0002469033,0.0001398822,0.0004130363,0.000139291,0.0004141453,0.001202203],"category_scores_gemma":[0.0002785515,0.000144959,0.0001563868,0.00008890289,0.00030768,0.0002784658,0.0005588021,0.0005192428,0.0003316648],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002385549,"about_ca_system_score_gemma":0.0001475304,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001680939,"about_ca_topic_score_gemma":0.0002683234,"domain_scores_codex":[0.9997502,0.00004929747,0.00001876441,0.00005755005,0.00006047562,0.00006380844],"domain_scores_gemma":[0.9997612,0.00005946843,0.0000685613,0.00003460344,0.00002590704,0.00005036491],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004926434,0.000007232986,0.0006904259,0.000009993979,0.000001128325,0.00001527754,0.000007215217,0.00001321086,0.9987811,0.00004743578,0.000009551448,0.0003680814],"study_design_scores_gemma":[0.00001813681,0.0002334217,0.02993495,0.000008865229,0.00001225508,0.0006426724,0.000122868,0.001150425,0.9662536,0.0005137352,0.001100138,0.000009064051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996797,0.0002861682,0.001758078,0.0001152146,0.00001063345,0.000008243125,0.0001843907,0.00004131882,0.0007989386],"genre_scores_gemma":[0.9981938,0.00006954267,0.001204514,0.00005042425,0.000004034377,0.000005854285,0.0001576492,0.000009390597,0.0003048815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001202203,"threshold_uncertainty_score":0.004021764,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02072175972142459,"score_gpt":0.2069544212327606,"score_spread":0.186232661511336,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}