{"id":"W4313830852","doi":"10.1038/s41588-022-01254-1","title":"Single-cell transcriptomic analysis of endometriosis","year":2023,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Endometriosis Research and Treatment","field":"Medicine","cited_by":183,"is_retracted":false,"has_abstract":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; University of British Columbia Hospital","funders":"Clinical and Translational Science Institute, University of California, Los Angeles; National Institute of Biomedical Imaging and Bioengineering; Michael Smith Health Research BC; Canadian Cancer Society Research Institute; U.S. Department of Health and Human Services; National Institutes of Health; National Center for Advancing Translational Sciences; BC Cancer Foundation; Cedars-Sinai Medical Center; Government of Canada; Ovarian Cancer Research Alliance; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; American Cancer Society","keywords":"Stromal cell; Endometriosis; Biology; Epithelium; Stroma; Cancer research; Downregulation and upregulation; Cell type; Transcriptome; Endometrium; Somatic cell; Pathology; Cell; Endocrinology; Immunology; Medicine; Genetics; Immunohistochemistry; Gene expression; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002028059,0.0001366574,0.0004845931,0.002737491,0.00003141784,0.00001056562,0.0001212569,0.0002315215,0.0001669716],"category_scores_gemma":[0.0008771059,0.0001095588,0.0004203928,0.00969181,0.00004809743,0.0000145604,0.00003057167,0.0003241909,0.00004792151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007864268,"about_ca_system_score_gemma":0.00006247631,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008097942,"about_ca_topic_score_gemma":0.00002037395,"domain_scores_codex":[0.9984598,0.00003902351,0.0002634314,0.0002556672,0.0006572512,0.0003248012],"domain_scores_gemma":[0.9984125,0.0007556109,0.00006033404,0.0003945113,0.0001891894,0.0001878568],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006000807,0.002527696,0.3598045,0.00049246,0.01185518,0.000324236,0.000589146,0.000372465,0.529305,0.00005093114,0.008212139,0.08586619],"study_design_scores_gemma":[0.004501134,0.0013654,0.2151306,0.00003026838,0.005152479,0.000006299694,0.0001173758,0.001196924,0.7332529,0.00003428008,0.0390157,0.0001966467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861107,0.009446369,0.00005107247,0.0003071546,0.0001088141,0.0003266966,0.0000942714,0.00006817067,0.003486693],"genre_scores_gemma":[0.9931688,0.004217009,0.001315431,0.0001235334,0.00004762699,0.00001476545,0.0001751448,0.00002149201,0.0009161871],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2039479,"threshold_uncertainty_score":0.4656594,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02719875744248442,"score_gpt":0.3149313678337523,"score_spread":0.2877326103912679,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}