{"id":"W4313855347","doi":"10.1139/gen-2022-0026","title":"High nucleotide similarity of three <i>Copia</i> lineage LTR retrotransposons among plant genomes","year":2023,"lang":"en","type":"article","venue":"Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institut National Du Cancer; Ministério da Ciência, Tecnologia e Inovação","keywords":"Retrotransposon; Biology; Genome; Long terminal repeat; Mobile genetic elements; Phylogenetic tree; Transposable element; Genetics; Horizontal gene transfer; Phylogenetics; Lineage (genetic); Evolutionary biology; Interspersed repeat; Genome evolution; Gene; Human genome","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001779755,0.0001617462,0.0002873079,0.00136382,0.0004580425,0.0004964922,0.0001607381,0.0003188991,0.001046865],"category_scores_gemma":[0.0006688993,0.0000830744,0.0002981133,0.001160909,0.0002098787,0.0001937227,0.0003456092,0.0002740664,0.0003369257],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001862455,"about_ca_system_score_gemma":0.0001577548,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008473275,"about_ca_topic_score_gemma":0.001349583,"domain_scores_codex":[0.9996163,0.00003525055,0.00004767799,0.0001368898,0.0001017982,0.00006209878],"domain_scores_gemma":[0.9994863,0.0001118603,0.0001868919,0.00005279303,0.00006953583,0.00009251849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005081484,0.00008569657,0.4338313,0.000289766,0.0002693129,0.001085021,0.001318104,0.0003161505,0.5334599,0.0004147985,0.0002807397,0.02814103],"study_design_scores_gemma":[0.000006646118,0.00008952995,0.9799167,0.00001829206,0.0001031942,0.00247023,0.0003760852,0.0006102708,0.0130522,0.0001464337,0.003197945,0.00001262451],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976115,0.0004083471,0.0006207337,0.00001129343,0.000002858039,0.0000083492,0.0005534239,0.00001764348,0.0007658798],"genre_scores_gemma":[0.9975243,0.000121372,0.0008034802,0.00001340585,0.000003680247,0.000005916831,0.001354663,0.0000067582,0.0001663699],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00136382,"threshold_uncertainty_score":0.003502131,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02155332533438198,"score_gpt":0.1985130177313743,"score_spread":0.1769596923969923,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}