{"id":"W4315435681","doi":"10.1097/md.0000000000032024","title":"Net charge and position 22 of the V3 loop are associated with HIV-1 tropism in recently infected female sex workers in Nairobi, Kenya","year":2022,"lang":"en","type":"article","venue":"Medicine","topic":"Sex work and related issues","field":"Social Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Fogarty International Center","keywords":"Medicine; Tropism; Position (finance); Human immunodeficiency virus (HIV); Virology; Loop (graph theory); Demography; Virus; Combinatorics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004389372,0.0004030808,0.0002230435,0.0004729651,0.0008661659,0.0005254856,0.0004374949,0.0006302432,0.00133089],"category_scores_gemma":[0.001793105,0.0004506653,0.0002812178,0.0005097876,0.0005399205,0.0003093486,0.0003567282,0.0005381095,0.000166015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004005557,"about_ca_system_score_gemma":0.0003209175,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02230468,"about_ca_topic_score_gemma":0.03496956,"domain_scores_codex":[0.9997497,0.00007993566,0.00002307479,0.00005269093,0.00003732717,0.00005724873],"domain_scores_gemma":[0.9993678,0.0001250746,0.0003395023,0.0000256356,0.00004778926,0.00009426858],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001035405,0.00002456685,0.9986307,0.00000561663,0.00001435542,0.0000949518,0.0001490944,0.00001725004,0.000477743,0.000006910681,0.00002534613,0.0004500255],"study_design_scores_gemma":[0.000003762603,0.00006092168,0.9992114,0.000006777932,0.000009945399,0.0002669177,0.0002480536,0.0001020496,0.00003475638,0.000006968959,0.00004643158,0.000001988776],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997626,0.00009115502,0.00001157125,0.00001927768,0.000001206115,0.000002492991,0.00003166045,5.990664e-7,0.0000793457],"genre_scores_gemma":[0.9997907,0.00004535849,0.0000309447,0.000009831291,0.00000230202,0.000002842421,0.00003864128,6.757306e-7,0.00007862788],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02230468,"threshold_uncertainty_score":0.04434973,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01022189488064177,"score_gpt":0.24987895476757,"score_spread":0.2396570598869283,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}