{"id":"W4315436404","doi":"10.1128/mra.00759-22","title":"Complete Genome Sequence of Phormidium yuhuli AB48, Isolated from an Industrial Photobioreactor Environment","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Mitacs; Genome British Columbia; Joint Genome Institute; U.S. Department of Energy","keywords":"Genome; Photobioreactor; Plasmid; Biology; Chromosome; Whole genome sequencing; Computational biology; Genetics; Gene; Biotechnology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001997693,0.000267656,0.000324687,0.00007103741,0.0001270317,0.00001220553,0.0004219574,0.0002873001,0.00007072151],"category_scores_gemma":[0.00001531277,0.0002604489,0.00009751324,0.0001212071,0.0002858641,0.000001601481,0.0003768663,0.000124118,0.0000901808],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003118907,"about_ca_system_score_gemma":0.00004604015,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001209575,"about_ca_topic_score_gemma":0.00001505425,"domain_scores_codex":[0.9983475,0.0001244293,0.0004050372,0.000605616,0.00007541236,0.0004420409],"domain_scores_gemma":[0.9991149,0.00001788445,0.000204887,0.0005318319,0.00004406057,0.00008648322],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00021152,0.00008020001,0.006814419,0.00000396429,0.0002485221,0.000004618512,0.0002195855,0.0001140521,0.9904904,0.000001039101,0.001549771,0.0002619303],"study_design_scores_gemma":[0.00124994,0.000906756,0.001848116,0.000009517495,0.00004555229,0.000008199444,0.0002744297,0.0000345278,0.05809392,0.00002285031,0.9371635,0.0003426969],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842527,0.000429566,0.0000246495,0.00008729215,0.0002043187,0.0003192128,0.01454077,0.00001210711,0.0001294153],"genre_scores_gemma":[0.9662286,0.0004064002,0.0001154046,0.0003764387,0.0002810579,0.00003600128,0.03205437,0.00003743119,0.000464309],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9356137,"threshold_uncertainty_score":0.9999848,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04227910903967441,"score_gpt":0.2473270942094382,"score_spread":0.2050479851697638,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}