{"id":"W4316016043","doi":"10.1101/2023.01.11.523565","title":"Novel reassortments of variation underlie repeated adaptation to whole genome duplication in two outcrossing Arabidopsis species","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Universitetet i Oslo; Univerzita Karlova v Praze; Grantová Agentura České Republiky; European Commission; Leverhulme Trust; Akademie Věd České Republiky; Norwegian Sequencing Centre","keywords":"Biology; Ploidy; Genome; Gene duplication; Adaptation (eye); Evolutionary biology; Genetics; Arabidopsis; Negative selection; Outcrossing; Haplotype; Meiosis; Gene; Directional selection; Allele; Genetic variation; Pollen; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001749766,0.0001715614,0.0002343075,0.0008463512,0.0002682648,0.0002416089,0.0002325489,0.0002506593,0.00103579],"category_scores_gemma":[0.0002616342,0.0001334218,0.0002452881,0.0004525999,0.0001556101,0.0001434458,0.0002543991,0.0002779819,0.0001649695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002067897,"about_ca_system_score_gemma":0.00008018062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005678201,"about_ca_topic_score_gemma":0.001049788,"domain_scores_codex":[0.9998946,0.00001108706,0.000009269969,0.00004763631,0.00001930318,0.00001805298],"domain_scores_gemma":[0.9997255,0.00007072798,0.0000808398,0.00003393488,0.0000307104,0.00005826121],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001419686,0.00002175776,0.03085351,0.00004177747,0.00004253828,0.000239064,0.000204256,0.000153158,0.965106,0.0001015861,0.00003455727,0.00305983],"study_design_scores_gemma":[0.00001142594,0.0001503197,0.9458355,0.00001035902,0.00009256272,0.001053244,0.0002704753,0.002068396,0.04896635,0.0002188711,0.001305262,0.00001724953],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991832,0.00007084728,0.0003581042,0.000005979846,0.000001824209,0.000002680149,0.0002256296,0.00001390694,0.000137756],"genre_scores_gemma":[0.9985626,0.00003956922,0.0004384516,0.00001475682,0.000002425705,0.000006138195,0.0007174194,0.00001115603,0.0002075047],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00103579,"threshold_uncertainty_score":0.003465056,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04611527760242021,"score_gpt":0.2450732964851342,"score_spread":0.198958018882714,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}