{"id":"W4317213709","doi":"10.1128/mra.01037-22","title":"Terpene Synthase Gene Amplicons from Subseafloor Sediment","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Institut National de la Recherche Scientifique","funders":"Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Compute Canada","keywords":"Actinobacteria; Terpene; Amplicon; Sediment; Cyanobacteria; Biology; Gene; Microbiology; Biochemistry; Genetics; 16S ribosomal RNA; Polymerase chain reaction; Bacteria; Paleontology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001869518,0.0002602884,0.0002431719,0.00007059547,0.0002092394,0.00002343676,0.000342444,0.0001881661,0.00005828212],"category_scores_gemma":[0.00003197315,0.0002490853,0.0001113097,0.0001425875,0.0001626868,7.319272e-7,0.0004672718,0.00008482677,0.0003443466],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002523351,"about_ca_system_score_gemma":0.00004758949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005515549,"about_ca_topic_score_gemma":0.00002349639,"domain_scores_codex":[0.9983901,0.00008051965,0.0002836766,0.0006497978,0.00006361601,0.0005323129],"domain_scores_gemma":[0.9992053,0.00002598047,0.00009474414,0.0005257769,0.00005634973,0.00009187027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007827258,0.00005968863,0.01276657,0.000003796396,0.0002828841,0.00001028541,0.00009520265,0.00005811674,0.9544581,0.000003233159,0.03162477,0.0005591213],"study_design_scores_gemma":[0.0008130689,0.000212291,0.002683816,0.00000821385,0.00003656573,0.00001213116,0.0001678909,0.000008763109,0.1900346,0.00003567497,0.8057018,0.000285135],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933082,0.001356356,0.00008867119,0.000394025,0.0002776721,0.0002626108,0.003756317,0.0000234768,0.0005326792],"genre_scores_gemma":[0.9781979,0.0004071524,0.0004360409,0.001872425,0.0004889261,0.0001096122,0.01567867,0.00005087596,0.002758352],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7740771,"threshold_uncertainty_score":0.9999961,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01468228687573603,"score_gpt":0.2379355344248406,"score_spread":0.2232532475491045,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}