{"id":"W4317434633","doi":"10.1186/s13059-023-02854-8","title":"Pan-3D genome analysis reveals structural and functional differentiation of soybean genomes","year":2023,"lang":"en","type":"article","venue":"Genome biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Genetics","funders":"National Key Research and Development Program of China; Key Technologies Research and Development Program; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Biology; Genome; Genome Biology; Human genetics; Evolutionary biology; Computational biology; Genetics; Structural variation; Genomics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001362793,0.0001966944,0.0002112111,0.0008700743,0.0001964411,0.0002680426,0.0001345434,0.0001879687,0.001371804],"category_scores_gemma":[0.0001674673,0.0001215613,0.0003965631,0.0007783552,0.00010732,0.0001729236,0.0003493369,0.0002303764,0.0002506961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002258244,"about_ca_system_score_gemma":0.0001638805,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001150878,"about_ca_topic_score_gemma":0.002445464,"domain_scores_codex":[0.9999188,0.000005985846,0.000005956361,0.00003892177,0.00001678942,0.00001347846],"domain_scores_gemma":[0.9998604,0.00002590813,0.00005167299,0.00001706111,0.00002092519,0.00002386523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002172168,0.00001680312,0.02298034,0.0001464186,0.00005047268,0.0001516367,0.0000969098,0.0003229319,0.965228,0.0001836836,0.0002295193,0.01037598],"study_design_scores_gemma":[0.00002535449,0.000156395,0.870258,0.00002556853,0.0001742147,0.00177509,0.0001738516,0.006120889,0.109158,0.0005445953,0.01156112,0.00002695408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9799367,0.001011693,0.008889453,0.00005752526,0.00001014168,0.00001842131,0.008526292,0.0002499355,0.001299825],"genre_scores_gemma":[0.9606312,0.0004742323,0.0195552,0.000076567,0.000007793768,0.00004108699,0.01849033,0.00009632712,0.0006272437],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001371804,"threshold_uncertainty_score":0.00458914,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02260061140197665,"score_gpt":0.2253993336755301,"score_spread":0.2027987222735534,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}