{"id":"W4317716348","doi":"10.1007/s00705-022-05694-2","title":"Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee","year":2023,"lang":"en","type":"article","venue":"Archives of Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":467,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"H2020 Marie Skłodowska-Curie Actions; U.S. National Library of Medicine; Australian Research Council; National Institute of Diabetes and Digestive and Kidney Diseases; Biotechnology and Biological Sciences Research Council; Vlaamse regering; Sigrid Juséliuksen Säätiö; Helsingin Yliopisto; KU Leuven; Directorate for Biological Sciences; National Institutes of Health; Siberian Branch, Russian Academy of Sciences; Fonds Wetenschappelijk Onderzoek; Bundesministerium für Bildung und Forschung; Academy of Finland; Deutsche Forschungsgemeinschaft; Horizon 2020; Alexander von Humboldt-Stiftung; Wellcome Trust; European Commission","keywords":"Biology; Taxonomy (biology); Virus classification; Myoviridae; Taxon; Nomenclature; Siphoviridae; Paraphyly; Podoviridae; Zoology; Virology; Ecology; Bacteriophage; Phylogenetics; Clade; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007374272,0.0001050222,0.0002333031,0.0000902709,0.0000556123,0.000004337704,0.0002903776,0.00004083174,0.001190018],"category_scores_gemma":[0.00002144798,0.00008295214,0.00008265588,0.0001407415,0.0007213915,0.0000545046,0.0004738362,0.00008353719,0.00003455257],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009361356,"about_ca_system_score_gemma":0.000009250862,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007097704,"about_ca_topic_score_gemma":0.000445186,"domain_scores_codex":[0.9991969,0.00009904797,0.0002559739,0.0001971427,0.00005978327,0.0001910897],"domain_scores_gemma":[0.9993928,0.0001200036,0.0001826262,0.0002576998,0.000003322525,0.00004355402],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000203784,0.00006734181,0.01239918,0.00001059607,0.00001791535,0.000001245682,0.000662953,0.00005525263,0.9826325,0.00005444456,0.001391934,0.00250281],"study_design_scores_gemma":[0.0003558006,0.0002129613,0.7927945,0.00001071861,0.0000172396,0.000003306244,0.00008091697,0.00002449038,0.1434982,0.00004885185,0.06288398,0.00006900897],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974505,0.00001815557,0.00003348736,0.001073867,0.0003427969,0.0003190512,0.000281497,0.000009223195,0.0004714117],"genre_scores_gemma":[0.9985623,0.00004983338,0.0005937431,0.0005379286,0.00004852405,0.00005486484,0.00001283952,0.000008569721,0.0001314344],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8391343,"threshold_uncertainty_score":0.999723,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03047343800610889,"score_gpt":0.2394190459000059,"score_spread":0.208945607893897,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}