{"id":"W4317939770","doi":"10.1128/aem.01869-22","title":"Characterization of Escherichia coli and Other Enterobacterales Resistant to Extended-Spectrum Cephalosporins Isolated from Dairy Manure in Ontario, Canada","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University; Public Health Agency of Canada; Agriculture and Agri-Food Canada; University of Guelph","funders":"Canadian Institutes of Health Research; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Multilocus sequence typing; Plasmid; Escherichia coli; Biology; Replicon; Cephalosporin; Manure; Microbiology; Polymerase chain reaction; Whole genome sequencing; Antibiotic resistance; Genetics; Bacteria; Genome; Gene; Genotype; Antibiotics; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001884803,0.0003576258,0.0003165579,0.001287084,0.001620462,0.0008650059,0.0004554086,0.0003307917,0.00100789],"category_scores_gemma":[0.0005027635,0.0002306736,0.0002641973,0.001846717,0.0003884131,0.0001715357,0.0003471435,0.0002665602,0.0003055341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004967583,"about_ca_system_score_gemma":0.008067946,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9296137,"about_ca_topic_score_gemma":0.9622033,"domain_scores_codex":[0.999469,0.00001769775,0.00003527959,0.00007988959,0.0002406781,0.0001575153],"domain_scores_gemma":[0.9994764,0.00002582572,0.00005619068,0.000009000622,0.0003546991,0.00007793294],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005623986,0.000310968,0.5917466,0.0002975964,0.00006306996,0.002180143,0.003787962,0.0004662108,0.3770905,0.0001902386,0.001001496,0.02230278],"study_design_scores_gemma":[0.00001011971,0.0001256868,0.9801356,0.00003078376,0.00002295039,0.0004602232,0.003607299,0.0002091799,0.01098629,0.00001144559,0.004388531,0.00001180512],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937196,0.0004480482,0.0003721843,0.0001094612,0.00001251848,0.00009850528,0.002324809,0.000009159649,0.002905775],"genre_scores_gemma":[0.985055,0.0008933322,0.0009202869,0.0001583114,0.000007019827,0.0000337024,0.003467973,0.00001087994,0.009453563],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07038629,"threshold_uncertainty_score":0.1416016,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003776228508210643,"score_gpt":0.169042412338319,"score_spread":0.1652661838301084,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}