{"id":"W4317989842","doi":"10.1136/jcp-2022-208651","title":"Cystic neutrophilic granulomatous mastitis: sensitivity and specificity of 16s rRNA and Sanger sequencing for <i>Corynebacterium</i> spp","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Pathology","topic":"Breast Lesions and Carcinomas","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Corynebacterium; Microbiology; Sanger sequencing; Mastitis; Biology; 16S ribosomal RNA; Granulomatous mastitis; Pathology; Medicine; DNA sequencing; Bacteria; Genetics; DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002397518,0.0001278073,0.0009568046,0.0001502728,0.00004829695,0.000007906038,0.00004306929,0.0002013418,0.00001294449],"category_scores_gemma":[0.001151524,0.00009834098,0.0002320683,0.0001262463,0.0003501963,0.00006066745,0.00006135986,0.0004028847,0.000004081122],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000186418,"about_ca_system_score_gemma":0.0001432276,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006766325,"about_ca_topic_score_gemma":0.000009838926,"domain_scores_codex":[0.9980804,0.0002823648,0.001051001,0.0002102601,0.0001535758,0.0002223465],"domain_scores_gemma":[0.9973804,0.001427118,0.0005276924,0.0001680544,0.0002624738,0.0002342439],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0051404,0.0005410805,0.40615,0.001088673,0.0002671687,0.01767054,0.0004431634,0.00001830409,0.4590504,0.0005223418,0.002594555,0.1065134],"study_design_scores_gemma":[0.00245838,0.001498316,0.9813452,0.0001735306,0.0002345957,0.01221456,0.0001289026,0.0002209589,0.000402437,0.0007277069,0.0005082743,0.00008713655],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969727,0.0003561389,0.0005467226,0.001334329,0.0004866466,0.0001651056,0.00003379807,0.00001458591,0.00008990707],"genre_scores_gemma":[0.9965545,0.0005457934,0.001805589,0.0003945695,0.0006232132,0.000001677123,0.000003501401,0.000017828,0.00005330616],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5751953,"threshold_uncertainty_score":0.4010229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0735277554737757,"score_gpt":0.3556943831209545,"score_spread":0.2821666276471788,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}