{"id":"W4318019176","doi":"10.1021/acs.jproteome.2c00620","title":"CaspSites: A Database and Web Application for Experimentally Observed Human Caspase Substrates Using N-Terminomics","year":2023,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Machine Learning in Bioinformatics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Caspase; Cleavage (geology); World Wide Web; Web site; Computer science; Database; Apoptosis; Information retrieval; Biology; The Internet; Biochemistry; Programmed cell death","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001740632,0.001676993,0.001624326,0.00309094,0.0005296725,0.001579236,0.002487598,0.001440773,0.06725232],"category_scores_gemma":[0.003700239,0.001029671,0.001034245,0.002081018,0.0003433533,0.00230905,0.002478288,0.001601927,0.03923077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005546063,"about_ca_system_score_gemma":0.001119228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007870924,"about_ca_topic_score_gemma":0.001184835,"domain_scores_codex":[0.9994649,0.00007898293,0.00009152869,0.0001033698,0.0001875942,0.00007373535],"domain_scores_gemma":[0.9987207,0.0005898512,0.0001730569,0.0001682989,0.0001726721,0.0001754105],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003391128,0.0003644624,0.005408911,0.003804394,0.0003371585,0.001280425,0.000278193,0.001862205,0.03508736,0.004864224,0.8279487,0.1153728],"study_design_scores_gemma":[0.002935047,0.0006829485,0.02234444,0.0008625559,0.0002899969,0.005507036,0.000355672,0.03971548,0.08177824,0.02553368,0.8194223,0.0005725838],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.0204908,0.002591552,0.1118738,0.000763025,0.0004970641,0.0009575078,0.3508105,0.4975382,0.01447757],"genre_scores_gemma":[0.06775054,0.003399888,0.1448262,0.001178749,0.0002241901,0.002329557,0.7216637,0.04228453,0.01634267],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.06725232,"threshold_uncertainty_score":0.2249814,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1883632673709802,"score_gpt":0.4569847632528405,"score_spread":0.2686214958818603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}