{"id":"W4318069442","doi":"10.1016/j.jfp.2023.100052","title":"Genomically Informed Custom Selective Enrichment of Shiga Toxigenic Escherichia coli (STEC) Outbreak Strains in Foods Using Antibiotics","year":2023,"lang":"en","type":"article","venue":"Journal of Food Protection","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Outbreak; Escherichia coli; Biology; Antibiotics; Food microbiology; Food contaminant; Antibiotic resistance; Food safety; Food science; Microbiology; Biotechnology; Bacteria; Gene; Virology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006566359,0.0001507653,0.0002793841,0.0002650887,0.00007440194,0.00002002122,0.0001715471,0.0001693886,0.000002271061],"category_scores_gemma":[0.0004451382,0.0001389234,0.0001696997,0.0006653399,0.00006918066,0.00001674473,0.0001317502,0.0003399165,0.000001105888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001769974,"about_ca_system_score_gemma":0.000538398,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002868316,"about_ca_topic_score_gemma":0.0002145007,"domain_scores_codex":[0.9985327,0.0001329174,0.0005570672,0.000163157,0.0003101242,0.0003040585],"domain_scores_gemma":[0.9989614,0.00001995047,0.0004375813,0.0001413788,0.0003617274,0.00007791895],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003291084,0.0001060734,0.001371486,0.00008718775,0.0003135847,0.000003852722,0.000343219,0.001915456,0.9940543,0.00001071749,0.00004999261,0.001415001],"study_design_scores_gemma":[0.001700762,0.00595502,0.05677691,0.0001110937,0.00005756494,0.00004070086,0.0009843492,0.001162487,0.9321539,0.000172274,0.0006389577,0.0002459462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972463,0.0002595865,0.001616502,0.00008166471,0.0001491932,0.0004887752,0.000008464222,0.00000806132,0.00014143],"genre_scores_gemma":[0.9975528,0.0003441997,0.001849344,0.00002102205,0.0001727896,0.000004729854,0.000002794036,0.00001964899,0.00003274446],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06190038,"threshold_uncertainty_score":0.5665131,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03759095842735808,"score_gpt":0.3088728850837957,"score_spread":0.2712819266564376,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}